SRR1043424_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043424_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	3765191
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	121073	3.215587203942642	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	32249	0.8565036939693099	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	12623	0.3352552367197308	No Hit
GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	12055	0.32016968063505946	No Hit
GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	8976	0.23839428066199034	No Hit
AGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	5996	0.15924822937269317	No Hit
TGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	5220	0.1386383851443393	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5132	0.13630118631431978	No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA	4271	0.11343382048878796	No Hit
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG	4145	0.11008737670944184	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	35295	43.654907	1
ACTACGG	255	42.35294	1
CTTACTG	9415	40.74615	38
TCGGGTA	210	40.714287	4
CACTTAC	9530	40.25446	36
CGCACTT	9550	40.1466	34
ACTTACT	9550	40.075916	37
GCACTTA	9600	39.867188	35
TCACGAC	700	39.857143	24
TAGCATA	2270	39.845814	29
CCGCACT	9640	39.725105	33
ATTACGG	340	39.705883	1
CCCGCAC	9675	39.697674	32
TAGTAGG	840	39.642857	1
ACCCGCA	9650	39.590675	31
CGTTTTA	1830	39.590164	1
CGGGTAC	695	39.17266	5
CATATGC	2315	39.168465	32
GCGCGAC	3690	39.085365	8
ATCAACG	10300	38.686893	14