##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1043424_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 3765191 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.551293413800256 31.0 31.0 33.0 30.0 34.0 2 30.603837361769962 31.0 31.0 34.0 26.0 34.0 3 31.56943751326294 31.0 31.0 34.0 28.0 34.0 4 35.19067000850687 37.0 35.0 37.0 33.0 37.0 5 35.51030744522655 37.0 35.0 37.0 33.0 37.0 6 35.779363118630634 37.0 35.0 37.0 35.0 37.0 7 33.784245739459166 37.0 35.0 37.0 32.0 37.0 8 34.769383014035675 37.0 35.0 37.0 32.0 37.0 9 36.79619440288687 39.0 37.0 39.0 32.0 39.0 10 36.757845219538666 39.0 35.0 39.0 32.0 39.0 11 36.51653262742846 39.0 35.0 39.0 33.0 39.0 12 36.51565909936574 39.0 35.0 39.0 33.0 39.0 13 36.54494977811218 39.0 35.0 39.0 33.0 39.0 14 37.73983497782715 40.0 36.0 41.0 33.0 41.0 15 37.79292630838648 40.0 36.0 41.0 33.0 41.0 16 37.56694653737354 40.0 35.0 41.0 32.0 41.0 17 37.51335270906576 40.0 36.0 41.0 32.0 41.0 18 37.37955657495198 39.0 35.0 41.0 32.0 41.0 19 37.23132080152109 39.0 35.0 41.0 32.0 41.0 20 36.99421861998501 38.0 35.0 41.0 32.0 41.0 21 36.900509429667714 38.0 35.0 41.0 32.0 41.0 22 36.848810325956904 38.0 35.0 40.0 32.0 41.0 23 36.80431457527653 38.0 35.0 40.0 32.0 41.0 24 36.67823677470811 38.0 35.0 40.0 32.0 41.0 25 36.563991308807445 38.0 35.0 40.0 31.0 41.0 26 36.300953922390654 38.0 35.0 40.0 31.0 41.0 27 36.192482931144795 38.0 35.0 40.0 31.0 41.0 28 36.02046669080001 37.0 35.0 40.0 30.0 41.0 29 35.87823247213753 37.0 35.0 40.0 30.0 41.0 30 35.70577641346747 37.0 34.0 40.0 30.0 41.0 31 35.562335084727444 37.0 34.0 40.0 29.0 41.0 32 35.468068153780244 37.0 34.0 40.0 28.0 41.0 33 35.120836101010546 37.0 34.0 40.0 25.0 41.0 34 34.998375912403915 37.0 34.0 40.0 25.0 41.0 35 34.9154478484624 37.0 34.0 40.0 25.0 41.0 36 34.82105715221353 37.0 34.0 40.0 24.0 41.0 37 34.705900444359926 37.0 34.0 40.0 24.0 41.0 38 34.58100717865309 37.0 34.0 40.0 23.0 41.0 39 34.458595593158485 36.0 34.0 40.0 23.0 41.0 40 34.373480920357025 36.0 34.0 40.0 23.0 41.0 41 34.2618095602587 36.0 33.0 40.0 23.0 41.0 42 34.138267886011626 35.0 33.0 40.0 23.0 41.0 43 33.95125081303976 35.0 33.0 40.0 23.0 41.0 44 33.721838546836004 35.0 33.0 40.0 22.0 41.0 45 33.511413630809166 35.0 33.0 40.0 20.0 41.0 46 33.514063695573476 35.0 33.0 40.0 22.0 41.0 47 33.4891677473998 35.0 33.0 39.0 22.0 41.0 48 33.398008494124205 35.0 33.0 39.0 22.0 41.0 49 33.35199568893052 35.0 33.0 39.0 22.0 41.0 50 33.29039190840518 35.0 33.0 39.0 21.0 41.0 51 32.847907051727255 35.0 32.0 39.0 20.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 2.0 8 0.0 9 0.0 10 3.0 11 7.0 12 25.0 13 37.0 14 91.0 15 187.0 16 416.0 17 901.0 18 1820.0 19 3463.0 20 6094.0 21 9626.0 22 14930.0 23 22284.0 24 34297.0 25 50914.0 26 68109.0 27 81765.0 28 90146.0 29 96591.0 30 107375.0 31 124180.0 32 148411.0 33 198940.0 34 366246.0 35 366830.0 36 370228.0 37 418945.0 38 524906.0 39 657032.0 40 390.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 29.758065394292082 17.33564114011746 23.99004459534722 28.916248870243237 2 32.044562945146744 20.34709527351999 26.964236342857507 20.644105438475762 3 26.642685590186527 21.506053743355917 32.56145571366765 19.289804952789915 4 23.92850721251591 24.143078000558273 29.655361441159293 22.27305334576652 5 22.089901946541357 33.2881120771828 28.108295170152058 16.51369080612378 6 82.13809073696395 2.299963003204884 14.105818270573788 1.4561279892573842 7 77.78439393911225 7.36241534625999 13.266896685984856 1.5862940286429028 8 76.42589711916341 3.9238115675937824 16.39914150437521 3.2511498088675976 9 45.15558440461586 17.597540204467716 22.6549728818538 14.59190250906262 10 31.14800816213573 17.969048582130362 29.61677110138636 21.266172154347547 11 27.270754657599046 15.354626099977398 38.03299752920901 19.34162171321455 12 22.567381043883298 16.672354735788968 38.53889483959777 22.221369380729953 13 19.174538555945766 19.69884130712094 41.27764036406121 19.84897977287208 14 20.286195308551413 18.157671151343983 41.31450436378925 20.24162917631536 15 25.463993725683505 14.972148823260229 39.21113165308214 20.352725797974127 16 24.643902527122794 15.865383721569504 36.190886464989426 23.29982728631828 17 24.537984925598728 19.484004928302443 35.6787477713614 20.29926237473743 18 25.411592665551364 23.123714042660783 31.78943644558802 19.675256846199833 19 26.586220991179466 20.951075257536736 31.155630617410914 21.30707313387289 20 26.777950972473906 22.469962347195665 33.54685061129701 17.20523606903342 21 23.011980003139282 18.57810134997136 35.34471425221191 23.065204394677455 22 25.50417761011327 19.382310220118978 34.14929016881215 20.964222000955594 23 26.741644713375763 18.894021578188198 34.10193533342664 20.262398375009393 24 27.005084204227618 17.127763239633794 32.685247574425844 23.181904981712748 25 21.248722840355246 19.091302406703935 34.48542185509314 25.17455289784768 26 19.640305100059997 19.350492445137576 36.05766613167831 24.951536323124113 27 21.21709097891714 22.060155779613837 34.46717576877242 22.255577472696604 28 24.649187783567953 22.464331822741528 32.19164711697229 20.69483327671823 29 23.540877474741652 19.13963992796116 37.018068937273036 20.301413660024153 30 28.407748770248308 19.253073748449946 32.63138576502493 19.70779171627681 31 29.07082270195589 19.686624131418565 31.1295496031941 20.113003563431445 32 29.21620709281415 19.0197522516122 29.97839950217665 21.785641153397 33 24.182836939746217 21.472961132649047 33.64023232818734 20.7039695994174 34 23.247080958177154 23.754173427058547 31.997234668838846 21.001510945925453 35 26.494671850644497 26.298400267078087 28.065667850581814 19.1412600316956 36 25.992200661267916 24.472755830979093 27.778059599101347 21.756983908651645 37 25.44707559324348 27.718275115392554 26.75056856345402 20.084080727909953 38 25.15481950318058 23.74485119081608 26.969866867311644 24.130462438691687 39 23.77759853351397 21.035347210805508 31.566233957321156 23.620820298359366 40 21.755177891373904 22.57433952221813 31.120625753115842 24.54985683329212 41 21.6748632406696 25.51041899335253 27.901957696169994 24.91276006980788 42 20.913042658393692 20.605329185159533 29.535101937723745 28.946526218723033 43 22.203282648874918 19.809008361063224 32.88507807439251 25.102630915669348 44 25.189611894854735 21.974024690912096 30.22547860121837 22.6108848130148 45 25.390451639770735 23.08740778356264 30.87261708635764 20.64952349030899 46 22.93224965214248 22.89934295497891 30.279606001395415 23.888801391483195 47 21.835094155914003 24.15627786213236 32.349806424162814 21.658821557790827 48 24.466992511136883 23.114205892875024 31.085514652510327 21.333286943477766 49 22.446059177343194 21.13648417835908 32.81504178672476 23.602414857572963 50 21.232893630097387 21.901040345629212 35.03588529771797 21.83018072655544 51 20.81920943718393 19.98233290157126 33.44130483685954 25.757152824385273 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1634.0 1 16197.0 2 30760.0 3 112828.0 4 194896.0 5 118425.0 6 41954.0 7 36520.5 8 31087.0 9 30218.5 10 29350.0 11 28706.5 12 28063.0 13 26765.0 14 25467.0 15 23938.0 16 22409.0 17 20778.0 18 19147.0 19 18178.5 20 17210.0 21 17098.5 22 16987.0 23 17584.0 24 18181.0 25 19584.5 26 22872.5 27 24757.0 28 26139.0 29 27521.0 30 32767.5 31 38014.0 32 39795.5 33 41577.0 34 49694.0 35 57811.0 36 60829.5 37 63848.0 38 69891.0 39 75934.0 40 82146.0 41 88358.0 42 100639.0 43 112920.0 44 124936.5 45 136953.0 46 148042.0 47 159131.0 48 180778.0 49 202425.0 50 208813.5 51 215202.0 52 209073.0 53 202944.0 54 204353.0 55 205762.0 56 216391.0 57 227020.0 58 231656.5 59 236293.0 60 241142.5 61 245992.0 62 246837.0 63 247682.0 64 228248.5 65 208815.0 66 176019.0 67 143223.0 68 118557.5 69 93892.0 70 81527.5 71 69163.0 72 64560.5 73 59958.0 74 50304.5 75 30859.0 76 21067.0 77 15809.5 78 10552.0 79 7921.0 80 5290.0 81 3965.5 82 2641.0 83 1791.0 84 941.0 85 605.5 86 270.0 87 257.5 88 245.0 89 162.0 90 79.0 91 74.0 92 69.0 93 55.0 94 41.0 95 25.5 96 10.0 97 8.5 98 7.0 99 3.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 3765191.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 23.98349440413183 #Duplication Level Percentage of deduplicated Percentage of total 1 77.19410482325043 18.513843810603923 2 8.738595606812751 4.191641176719291 3 2.7991679211781815 2.0140148452140667 4 1.3837228158313948 1.3274603364144717 5 0.8626743984949352 1.0344973304445533 6 0.6479473437466448 0.9324024895751845 7 0.4945959439885057 0.8303497338468238 8 0.4106362775702666 0.787879429219201 9 0.370899229853553 0.8005913643320542 >10 5.562129588657271 32.60636744156553 >50 1.306635063583159 21.079788818393805 >100 0.2188557528170508 7.878185668209656 >500 0.006257263687505625 1.0535553919983303 >1k 0.0028334778962286716 1.1922436931702414 >5k 4.722463160381119E-4 0.7170564595507338 >10k+ 4.722463160381119E-4 5.040122010742008 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 121073 3.215587203942642 No Hit GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 32249 0.8565036939693099 No Hit CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 12623 0.3352552367197308 No Hit GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 12055 0.32016968063505946 No Hit GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 8976 0.23839428066199034 No Hit AGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 5996 0.15924822937269317 No Hit TGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 5220 0.1386383851443393 No Hit CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5132 0.13630118631431978 No Hit CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA 4271 0.11343382048878796 No Hit CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG 4145 0.11008737670944184 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.030967884497758547 0.0 2 0.0 0.0 0.0 0.10036675430276977 0.0 3 0.0 0.0 0.0 0.16015123801156436 0.0 4 0.0 0.0 0.0 0.20065383137269796 0.0 5 0.0 0.0 0.0 0.4410666019333415 0.0 6 0.0 0.0 0.0 0.5433987279795368 0.0 7 0.0 0.0 0.0 0.8304492388301151 0.0 8 0.0 0.0 0.0 1.1642437262810839 0.0 9 0.0 0.0 0.0 1.4960994010662407 0.0 10 0.0 0.0 0.0 1.688280886680118 0.0 11 0.0 0.0 0.0 1.864022303251017 0.0 12 0.0 0.0 0.0 2.007361645133009 0.0 13 0.0 0.0 0.0 2.0819926532279505 0.0 14 0.0 0.0 0.0 2.13864316577831 0.0 15 0.0 0.0 0.0 2.283283902463381 0.0 16 0.0 0.0 0.0 2.443647613095856 0.0 17 0.0 0.0 0.0 2.6644332252998586 0.0 18 0.0 0.0 0.0 2.7928198064852485 0.0 19 0.0 0.0 0.0 2.944976762135042 0.0 20 0.0 0.0 0.0 3.1137331412934963 0.0 21 0.0 0.0 0.0 3.2908025117450883 0.0 22 5.31181552277162E-5 0.0 0.0 3.4666501646264427 0.0 23 5.31181552277162E-5 0.0 0.0 3.627730970354492 0.0 24 7.96772328415743E-5 0.0 0.0 3.7669270961287222 0.0 25 7.96772328415743E-5 0.0 0.0 3.911674069124249 0.0 26 7.96772328415743E-5 0.0 0.0 4.062343716427666 0.0 27 7.96772328415743E-5 0.0 0.0 4.228258274281438 0.0 28 7.96772328415743E-5 0.0 0.0 4.3960054084905655 0.0 29 7.96772328415743E-5 0.0 0.0 4.570232957637474 0.0 30 7.96772328415743E-5 0.0 0.0 4.748683400124987 0.0 31 7.96772328415743E-5 0.0 0.0 4.939961877099993 0.0 32 7.96772328415743E-5 0.0 0.0 5.157347927369422 0.0 33 7.96772328415743E-5 0.0 0.0 5.364827441688881 0.0 34 7.96772328415743E-5 0.0 0.0 5.599051947165496 0.0 35 7.96772328415743E-5 0.0 0.0 5.808868660314975 0.0 36 7.96772328415743E-5 0.0 0.0 6.05225604756837 0.0 37 7.96772328415743E-5 0.0 0.0 6.366927999137361 0.0 38 7.96772328415743E-5 0.0 0.0 6.697907224361261 0.0 39 7.96772328415743E-5 0.0 0.0 7.104765734327953 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 35295 0.0 43.654907 1 ACTACGG 255 0.0 42.35294 1 CTTACTG 9415 0.0 40.74615 38 TCGGGTA 210 0.0 40.714287 4 CACTTAC 9530 0.0 40.25446 36 CGCACTT 9550 0.0 40.1466 34 ACTTACT 9550 0.0 40.075916 37 GCACTTA 9600 0.0 39.867188 35 TCACGAC 700 0.0 39.857143 24 TAGCATA 2270 0.0 39.845814 29 CCGCACT 9640 0.0 39.725105 33 ATTACGG 340 0.0 39.705883 1 CCCGCAC 9675 0.0 39.697674 32 TAGTAGG 840 0.0 39.642857 1 ACCCGCA 9650 0.0 39.590675 31 CGTTTTA 1830 0.0 39.590164 1 CGGGTAC 695 0.0 39.17266 5 CATATGC 2315 0.0 39.168465 32 GCGCGAC 3690 0.0 39.085365 8 ATCAACG 10300 0.0 38.686893 14 >>END_MODULE