SRR1043423_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043423_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	865386
Sequences flagged as poor quality	0
Sequence length	51
%GC	37

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	62632	7.237463975613194	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6566	0.7587365637992757	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2610	0.30159951744077207	No Hit
GCGAAGGGTCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCA	1434	0.1657064015364242	No Hit
CTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1205	0.1392442216536898	No Hit
CCTGTCTCTTATACACATCTGACGCTGATTACCTCGTATGCCGTCTTCTGC	1049	0.12121758382964364	RNA PCR Primer, Index 10 (95% over 23bp)
CTGTCTCTTATACACATCTGACGCTGATTACCTCGTATGCCGTCTTCTGCT	914	0.1056176087896037	TruSeq Adapter, Index 10 (95% over 24bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTTACGG	75	0.0	45.000004	1
GCATAAG	40	6.8121153E-9	45.0	8
ACCGGTC	20	7.0323196E-4	45.0	40
ACCGGCC	20	7.0323196E-4	45.0	20
AAATACG	20	7.0323196E-4	45.0	18
CTATCTA	20	7.0323196E-4	45.0	38
TAGACTT	20	7.0323196E-4	45.0	10
CTATCGG	55	1.8189894E-12	45.0	1
GCAACTA	20	7.0323196E-4	45.0	8
GCAACGT	20	7.0323196E-4	45.0	16
GCAACGC	20	7.0323196E-4	45.0	12
CGTGACA	25	3.8900038E-5	45.0	34
TCCTCGA	25	3.8900038E-5	45.0	26
GTGATAA	20	7.0323196E-4	45.0	14
TTCGTCT	20	7.0323196E-4	45.0	36
TATGCGT	25	3.8900038E-5	45.0	20
ATCACGG	90	0.0	45.0	1
TGTGACG	25	3.8900038E-5	45.0	12
ACTAGCG	25	3.8900038E-5	45.0	22
TACGCGG	80	0.0	45.0	1