##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1043423_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 865386 Sequences flagged as poor quality 0 Sequence length 51 %GC 37 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.56669971550268 31.0 31.0 33.0 30.0 34.0 2 30.58530759684118 31.0 31.0 34.0 26.0 34.0 3 31.485578689740763 31.0 31.0 34.0 28.0 34.0 4 35.102291925221806 37.0 35.0 37.0 32.0 37.0 5 35.418198353104856 37.0 35.0 37.0 33.0 37.0 6 35.83495341963008 37.0 35.0 37.0 35.0 37.0 7 33.75468172584257 37.0 35.0 37.0 32.0 37.0 8 34.791677933315306 37.0 35.0 37.0 31.0 37.0 9 36.786263008645854 39.0 37.0 39.0 32.0 39.0 10 36.770082945645065 39.0 35.0 39.0 32.0 39.0 11 36.50891394129325 39.0 35.0 39.0 33.0 39.0 12 36.393701770077165 39.0 35.0 39.0 32.0 39.0 13 36.44578488674418 39.0 35.0 39.0 32.0 39.0 14 37.813335320885706 40.0 36.0 41.0 33.0 41.0 15 37.97087195771598 40.0 36.0 41.0 33.0 41.0 16 37.916426889272536 40.0 36.0 41.0 33.0 41.0 17 37.889902309489635 40.0 36.0 41.0 33.0 41.0 18 37.58111524799338 39.0 36.0 41.0 33.0 41.0 19 37.29403526287691 38.0 35.0 41.0 33.0 41.0 20 36.99086419239507 38.0 35.0 41.0 33.0 41.0 21 36.90498112980797 38.0 35.0 41.0 33.0 41.0 22 36.8174571809574 38.0 35.0 40.0 33.0 41.0 23 36.73371882604988 38.0 35.0 40.0 33.0 41.0 24 36.57486023577918 37.0 35.0 40.0 32.0 41.0 25 36.460458107711474 37.0 35.0 40.0 32.0 41.0 26 36.22293750996665 37.0 35.0 40.0 32.0 41.0 27 36.13802280138574 36.0 35.0 40.0 31.0 41.0 28 36.05898177229583 36.0 35.0 40.0 31.0 41.0 29 35.98742988677885 36.0 35.0 40.0 31.0 41.0 30 35.835261952469764 36.0 35.0 40.0 31.0 41.0 31 35.39777509689318 36.0 35.0 40.0 30.0 41.0 32 35.27391245062897 36.0 35.0 40.0 29.0 41.0 33 35.16040587668393 36.0 35.0 40.0 28.0 41.0 34 34.992371034428565 36.0 35.0 40.0 27.0 41.0 35 34.78484283314035 36.0 35.0 40.0 25.0 41.0 36 34.603948989237175 35.0 34.0 40.0 24.0 41.0 37 34.54290917578977 35.0 34.0 40.0 24.0 41.0 38 34.4448003549861 35.0 34.0 40.0 23.0 41.0 39 34.29642032572748 35.0 34.0 40.0 23.0 41.0 40 34.26831263736645 35.0 34.0 40.0 23.0 41.0 41 34.186008324608906 35.0 34.0 40.0 23.0 41.0 42 34.08312128922816 35.0 34.0 40.0 23.0 41.0 43 33.892855904763884 35.0 34.0 40.0 22.0 41.0 44 33.70761833447733 35.0 33.0 40.0 21.0 41.0 45 33.53216137076403 35.0 33.0 40.0 20.0 41.0 46 33.55006089768034 35.0 33.0 40.0 20.0 41.0 47 33.55896790565135 35.0 33.0 40.0 20.0 41.0 48 33.49929857890005 35.0 33.0 40.0 20.0 41.0 49 33.4128700949634 35.0 33.0 40.0 20.0 41.0 50 33.28159572722461 35.0 33.0 40.0 20.0 41.0 51 32.87702828564363 35.0 33.0 39.0 18.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 0.0 12 7.0 13 5.0 14 11.0 15 33.0 16 74.0 17 185.0 18 392.0 19 748.0 20 1289.0 21 2142.0 22 3418.0 23 5477.0 24 8831.0 25 13420.0 26 16503.0 27 18167.0 28 18146.0 29 19405.0 30 21637.0 31 26324.0 32 32655.0 33 43738.0 34 76458.0 35 115914.0 36 103948.0 37 79487.0 38 96820.0 39 160042.0 40 109.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 25.173737499797777 18.571019175258208 24.980760030783948 31.27448329416006 2 32.35573489749083 20.57914040670868 29.284157589792304 17.780967106008188 3 21.215503832971645 21.700605279031553 39.056213065614656 18.027677822382152 4 21.511325581879067 24.77692035692743 35.87393371281717 17.837820348376333 5 18.93120526562713 31.109008003364973 33.314844474026614 16.644942256981277 6 77.00043679930111 2.1358099160374677 19.210387041158512 1.6533662435028993 7 73.52245125296687 7.338459369576119 17.368549988097797 1.7705393893591992 8 72.74984804468757 3.8938693253646353 20.49859831335381 2.857684316593982 9 37.63060645769634 24.89444016889573 26.76736161666586 10.707591756742078 10 28.5678298470278 23.053065337317683 37.25424261543404 11.12486220022048 11 27.724506751900307 21.26704152828911 37.14712278682576 13.861328932984819 12 17.206541358422715 32.37272153697888 35.63080521293388 14.789931891664528 13 12.420931237621131 34.95908184324683 36.37602179836512 16.24396512076692 14 10.617574122992513 25.89954078295697 47.62730157409526 15.855583519955257 15 12.714441879115215 22.758861363599596 45.64830029605286 18.878396461232327 16 13.074050192630803 24.71070712953526 37.46663338671992 24.748609291114025 17 15.649894960168066 25.254857370005983 41.015685486014334 18.079562183811618 18 18.687614544261173 26.880952546031484 36.52150601003483 17.909926899672516 19 19.593221984178157 26.48956650558248 36.97482972916132 16.94238178107804 20 14.777914133115164 31.051461428772825 36.5768570325843 17.593767405527707 21 16.503849149396917 27.049778942575912 34.8829308539773 21.56344105404987 22 12.18358050627119 30.209409442722666 36.33603964011435 21.27097041089179 23 12.163358316404471 26.218589161368456 46.146921720480805 15.471130801746272 24 13.907435525880937 27.358080671515374 41.66152445267199 17.072959349931708 25 12.44646897453853 32.82939636185471 36.0539689803163 18.670165683290463 26 12.149029450441768 33.567795180416596 36.82426108118227 17.458914287959363 27 12.974557018486548 30.690813116921234 40.60153503754394 15.733094827048276 28 12.166362756041812 26.323166771822056 40.3386465692766 21.171823902859533 29 13.030716928630692 32.3726059816082 38.598960463885476 15.997716625875622 30 19.44392444527644 30.44144462702193 35.11381048456989 15.000820443131735 31 18.342103985966958 29.17622887358936 36.023577917830885 16.4580892226128 32 17.80893150570959 30.716004187726632 34.68302006272346 16.79204424384032 33 14.21169281684705 28.82609610046846 36.61083031156039 20.3513807711241 34 14.913345027536845 29.774459027532224 36.71818125091 18.594014694020935 35 19.693524045917083 29.641570351265216 34.29683401395447 16.368071588863238 36 14.548767833082579 32.941716182143 35.730298387078136 16.779217597696288 37 14.925247230715541 32.39409928055226 35.27304578534897 17.407607703383228 38 14.980020476411681 33.687510544427575 33.44773315029362 17.884735828867118 39 17.439963207169978 29.19298440233607 34.06086994705253 19.306182443441426 40 13.252005463457925 27.333351822192643 37.490668903818644 21.923973810530793 41 15.344597670865948 28.742780678217585 33.107422583679416 22.805199067237048 42 15.982116650835582 28.6339275190493 34.177234205314164 21.206721624800956 43 15.027167067643804 30.54983556470754 35.350005662213164 19.072991705435495 44 12.523544406773393 37.034456300425475 32.27022392319728 18.171775369603854 45 15.73066816426427 32.772889785598565 33.737892686038364 17.758549364098794 46 14.82448294749395 31.402171978747056 33.78249705911582 19.990848014643177 47 14.210190597028378 29.78670789682292 36.840438833075645 19.162662673073054 48 16.018401037225008 28.078221741511882 35.76612055198489 20.137256669278216 49 16.192311870078786 30.785915186980144 34.20958970910091 18.81218323384016 50 13.31567647269542 30.330049249698977 34.737331086936926 21.61694319066867 51 14.179452868430968 28.08862172487191 36.70639460310197 21.025530803595156 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 883.0 1 5898.0 2 10913.0 3 42774.0 4 74635.0 5 42605.0 6 10575.0 7 10565.0 8 10555.0 9 12684.0 10 14813.0 11 17035.5 12 19258.0 13 18963.5 14 18669.0 15 17033.5 16 15398.0 17 13392.5 18 11387.0 19 9834.5 20 8282.0 21 7790.0 22 7298.0 23 6532.0 24 5766.0 25 6309.0 26 7391.5 27 7931.0 28 9298.5 29 10666.0 30 11878.5 31 13091.0 32 14963.5 33 16836.0 34 19994.5 35 23153.0 36 24838.5 37 26524.0 38 30593.0 39 34662.0 40 39630.0 41 44598.0 42 55232.0 43 65866.0 44 70203.0 45 74540.0 46 75032.5 47 75525.0 48 68555.5 49 61586.0 50 52586.5 51 43587.0 52 39141.5 53 34696.0 54 31224.0 55 27752.0 56 25237.5 57 22723.0 58 20968.5 59 19214.0 60 16305.0 61 13396.0 62 11497.5 63 9599.0 64 8196.5 65 6794.0 66 5729.0 67 4664.0 68 4007.5 69 3351.0 70 2992.5 71 2634.0 72 2627.5 73 2621.0 74 2256.0 75 1459.5 76 1028.0 77 832.0 78 636.0 79 479.0 80 322.0 81 225.5 82 129.0 83 94.5 84 60.0 85 36.5 86 13.0 87 8.0 88 3.0 89 3.5 90 4.0 91 3.5 92 3.0 93 2.0 94 1.0 95 2.0 96 3.0 97 1.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 865386.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 32.15174308709048 #Duplication Level Percentage of deduplicated Percentage of total 1 77.80262579299853 25.01490035997528 2 9.742212586028208 6.264582323315966 3 3.5974457264071544 3.469924522955832 4 1.9104043240492463 2.456913160771925 5 1.2128127211262727 1.9497021511203514 6 0.8186984738332651 1.5793549797888127 7 0.577303290872905 1.2992914964034257 8 0.42852233552871777 1.1022192031199456 9 0.33001197758370543 0.9549414287040564 >10 2.6202968827801425 18.497860606347462 >50 0.7121671954604397 16.13003823396595 >100 0.24113337141526067 11.355409168002566 >500 0.004118737710509111 0.836201135233987 >1k 0.001497722803821495 0.7581910091712712 >5k 3.7443070095537375E-4 0.7904544563700486 >10k+ 3.7443070095537375E-4 7.540015764753106 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 62632 7.237463975613194 No Hit CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 6566 0.7587365637992757 No Hit CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2610 0.30159951744077207 No Hit GCGAAGGGTCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCA 1434 0.1657064015364242 No Hit CTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1205 0.1392442216536898 No Hit CCTGTCTCTTATACACATCTGACGCTGATTACCTCGTATGCCGTCTTCTGC 1049 0.12121758382964364 RNA PCR Primer, Index 10 (95% over 23bp) CTGTCTCTTATACACATCTGACGCTGATTACCTCGTATGCCGTCTTCTGCT 914 0.1056176087896037 TruSeq Adapter, Index 10 (95% over 24bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.11023982361628222 0.0 2 0.0 0.0 0.0 0.3794838372703048 0.0 3 0.0 0.0 0.0 0.6200701189989207 0.0 4 0.0 0.0 0.0 0.7767632016233218 0.0 5 0.0 0.0 0.0 1.6893039637803247 0.0 6 0.0 0.0 0.0 1.9543879840903366 0.0 7 0.0 0.0 0.0 2.714280101596282 0.0 8 0.0 0.0 0.0 3.604287566473227 0.0 9 0.0 0.0 0.0 4.2741620502296085 0.0 10 0.0 0.0 0.0 4.732107984182781 0.0 11 0.0 0.0 0.0 5.250604932365442 0.0 12 0.0 0.0 0.0 5.685208681443887 0.0 13 0.0 0.0 0.0 5.8667461687616855 0.0 14 0.0 0.0 0.0 6.0117681589487235 0.0 15 0.0 0.0 0.0 6.491785168699286 0.0 16 0.0 0.0 0.0 7.08088644835946 0.0 17 0.0 0.0 0.0 7.819169711550684 0.0 18 0.0 0.0 0.0 8.160751387242225 0.0 19 0.0 0.0 0.0 8.561381857344584 0.0 20 0.0 0.0 0.0 8.973452309142973 0.0 21 0.0 0.0 0.0 9.38170943370935 0.0 22 0.0 0.0 0.0 9.812153189443785 0.0 23 0.0 0.0 0.0 10.148765984196647 0.0 24 0.0010399983360026624 0.0 0.0 10.432223308442707 0.0 25 0.0010399983360026624 0.0 0.0 10.704818427846071 0.0 26 0.0010399983360026624 0.0 0.0 11.00191128583083 0.0 27 0.0010399983360026624 0.0 0.0 11.28767971749023 0.0 28 0.0010399983360026624 0.0 0.0 11.588008125853666 0.0 29 0.0010399983360026624 0.0 0.0 11.95420309549727 0.0 30 0.0010399983360026624 0.0 0.0 12.276833690399428 0.0 31 0.0010399983360026624 0.0 0.0 12.56398878650683 0.0 32 0.0010399983360026624 0.0 0.0 12.866859413024939 0.0 33 0.0010399983360026624 0.0 0.0 13.170192261025715 0.0 34 0.0010399983360026624 0.0 0.0 13.548982766072019 0.0 35 0.0010399983360026624 0.0 0.0 13.864795594104827 0.0 36 0.0010399983360026624 0.0 0.0 14.171710658596279 0.0 37 0.0011555537066696249 0.0 0.0 14.496883471653112 0.0 38 0.0011555537066696249 0.0 0.0 14.819745177296605 0.0 39 0.0011555537066696249 0.0 0.0 15.159824633169476 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TTTACGG 75 0.0 45.000004 1 GCATAAG 40 6.8121153E-9 45.0 8 ACCGGTC 20 7.0323196E-4 45.0 40 ACCGGCC 20 7.0323196E-4 45.0 20 AAATACG 20 7.0323196E-4 45.0 18 CTATCTA 20 7.0323196E-4 45.0 38 TAGACTT 20 7.0323196E-4 45.0 10 CTATCGG 55 1.8189894E-12 45.0 1 GCAACTA 20 7.0323196E-4 45.0 8 GCAACGT 20 7.0323196E-4 45.0 16 GCAACGC 20 7.0323196E-4 45.0 12 CGTGACA 25 3.8900038E-5 45.0 34 TCCTCGA 25 3.8900038E-5 45.0 26 GTGATAA 20 7.0323196E-4 45.0 14 TTCGTCT 20 7.0323196E-4 45.0 36 TATGCGT 25 3.8900038E-5 45.0 20 ATCACGG 90 0.0 45.0 1 TGTGACG 25 3.8900038E-5 45.0 12 ACTAGCG 25 3.8900038E-5 45.0 22 TACGCGG 80 0.0 45.0 1 >>END_MODULE