SRR1043422_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043422_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	3319498
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	83621	2.519085717177718	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	30252	0.9113426186730644	No Hit
GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	9575	0.2884472290689737	No Hit
GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	8517	0.25657493994573877	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8405	0.2532009358041487	No Hit
TGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	5412	0.1630367001275494	No Hit
AGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	5254	0.15827694428494912	No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA	4106	0.12369340183365075	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3611	0.10878150852930173	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	26900	43.770447	1
CGACGGT	695	40.791367	27
CTAGCGG	900	40.75	1
GCGCGAC	3280	40.335365	8
ATTGCGG	790	40.158226	1
TAGCATA	4175	40.09581	29
CGCACTT	9075	40.09091	34
TAGCGGG	2690	39.814125	2
GCACTTA	9120	39.671055	35
CCCGCAC	9245	39.645752	32
GGTACCT	4160	39.591347	7
CTTACTG	9135	39.581284	38
CCAGTAG	4315	39.577057	25
ACCCGCA	9235	39.566864	31
CCGCACT	9235	39.46941	33
CGTTTTA	1330	39.24812	1
ATAGGGC	1585	39.17981	3
TATGCGG	810	39.166668	1
GGGTACC	4370	39.130436	6
TAGTAGG	755	39.039734	1