SRR1043421_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043421_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2555071
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	131429	5.143849231586911	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	13796	0.5399458566904795	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	13492	0.5280479485697267	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5555	0.21741078819336135	No Hit
GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	5179	0.2026949544650618	No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA	3232	0.12649354949431935	No Hit
GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	3121	0.12214924751601813	No Hit
TGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	2588	0.10128877044904036	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	35300	43.98017	1
CGTTTTA	1700	41.823532	1
ACCCGCA	4335	41.055363	31
AATGCGG	340	41.02941	1
CGCACTT	4325	40.99422	34
TCACGAC	380	40.855267	24
CCCGCAC	4410	40.714287	32
CCGCACT	4370	40.572083	33
CAACGCA	4640	40.199352	16
TCAACGC	4650	40.16129	15
ATCAACG	4650	40.1129	14
CATGCGG	405	40.0	1
CACTTAC	4445	39.938133	36
CTTACTG	4400	39.886364	38
TATGACC	4570	39.830414	27
AACGCAA	4705	39.73964	17
CTTATGA	4595	39.662678	25
CACGACG	375	39.6	25
GCTTATG	4655	39.53813	24
CACGACC	575	39.52174	26