FastQCFastQC Report
Thu 26 May 2016
SRR1043421_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1043421_1.fastq.gz
File typeConventional base calls
EncodingIllumina 1.5
Total Sequences2555071
Sequences flagged as poor quality0
Sequence length51
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1314295.143849231586911No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC137960.5399458566904795No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT134920.5280479485697267No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT55550.21741078819336135No Hit
GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC51790.2026949544650618No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA32320.12649354949431935No Hit
GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC31210.12214924751601813No Hit
TGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC25880.10128877044904036No Hit

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTTTTT353000.043.980171
CGTTTTA17000.041.8235321
ACCCGCA43350.041.05536331
AATGCGG3400.041.029411
CGCACTT43250.040.9942234
TCACGAC3800.040.85526724
CCCGCAC44100.040.71428732
CCGCACT43700.040.57208333
CAACGCA46400.040.19935216
TCAACGC46500.040.1612915
ATCAACG46500.040.112914
CATGCGG4050.040.01
CACTTAC44450.039.93813336
CTTACTG44000.039.88636438
TATGACC45700.039.83041427
AACGCAA47050.039.7396417
CTTATGA45950.039.66267825
CACGACG3750.039.625
GCTTATG46550.039.5381324
CACGACC5750.039.5217426