##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1043421_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2555071 Sequences flagged as poor quality 0 Sequence length 51 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.532455653874198 31.0 31.0 33.0 30.0 34.0 2 30.55185902857494 31.0 31.0 34.0 26.0 34.0 3 31.49950353630095 31.0 31.0 34.0 28.0 34.0 4 35.12865043671976 37.0 35.0 37.0 32.0 37.0 5 35.462396935349354 37.0 35.0 37.0 33.0 37.0 6 35.78499071062996 37.0 35.0 37.0 35.0 37.0 7 33.73676426212813 37.0 35.0 37.0 32.0 37.0 8 34.74907350911188 37.0 35.0 37.0 31.0 37.0 9 36.790729103026884 39.0 37.0 39.0 32.0 39.0 10 36.80407785145697 39.0 35.0 39.0 32.0 39.0 11 36.65440138454078 39.0 35.0 39.0 33.0 39.0 12 36.65241396423035 39.0 35.0 39.0 33.0 39.0 13 36.662509965476495 39.0 35.0 39.0 33.0 39.0 14 37.82831670822455 40.0 36.0 41.0 33.0 41.0 15 37.93802833659026 40.0 36.0 41.0 33.0 41.0 16 37.82932255111502 40.0 36.0 41.0 33.0 41.0 17 37.71103073065289 40.0 36.0 41.0 32.0 41.0 18 37.48180500659277 39.0 36.0 41.0 32.0 41.0 19 37.23090082428238 38.0 35.0 41.0 32.0 41.0 20 36.830329959519716 38.0 35.0 41.0 32.0 41.0 21 36.78932953330847 38.0 35.0 40.0 32.0 41.0 22 36.741839659250175 38.0 35.0 40.0 32.0 41.0 23 36.66026110429025 38.0 35.0 40.0 32.0 41.0 24 36.552648830502164 38.0 35.0 40.0 32.0 41.0 25 36.442588092463964 38.0 35.0 40.0 31.0 41.0 26 36.152109276024035 37.0 35.0 40.0 31.0 41.0 27 36.00665539235504 37.0 35.0 40.0 31.0 41.0 28 35.85657854517546 37.0 35.0 40.0 30.0 41.0 29 35.73749574865043 37.0 35.0 40.0 30.0 41.0 30 35.55383979544991 37.0 35.0 40.0 30.0 41.0 31 35.222033360325405 37.0 34.0 40.0 27.0 41.0 32 35.02878276180975 37.0 34.0 40.0 25.0 41.0 33 34.60683088649983 37.0 34.0 40.0 24.0 41.0 34 34.46078289018192 37.0 34.0 40.0 23.0 41.0 35 34.28540263656078 36.0 33.0 40.0 22.0 41.0 36 34.16648656730087 36.0 34.0 40.0 21.0 41.0 37 34.03143043774517 36.0 33.0 40.0 21.0 41.0 38 33.907922323880626 36.0 33.0 40.0 21.0 41.0 39 33.77639721166261 36.0 33.0 40.0 20.0 41.0 40 33.66945654347766 35.0 33.0 40.0 20.0 41.0 41 33.54863798305409 35.0 33.0 40.0 18.0 41.0 42 33.43792755661193 35.0 33.0 40.0 18.0 41.0 43 33.259703155019956 35.0 33.0 40.0 18.0 41.0 44 33.038925728482695 35.0 33.0 40.0 18.0 41.0 45 32.80208182081829 35.0 32.0 39.0 18.0 41.0 46 32.791054338607424 35.0 32.0 39.0 18.0 41.0 47 32.754529326190934 35.0 32.0 39.0 18.0 41.0 48 32.662039919830015 35.0 32.0 39.0 18.0 41.0 49 32.57797532827855 35.0 32.0 39.0 18.0 41.0 50 32.49638307506915 35.0 32.0 39.0 18.0 41.0 51 32.07414862444136 35.0 31.0 38.0 15.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 3.0 10 3.0 11 12.0 12 16.0 13 31.0 14 70.0 15 154.0 16 316.0 17 745.0 18 1521.0 19 2835.0 20 4885.0 21 7796.0 22 11943.0 23 18826.0 24 29245.0 25 43846.0 26 57379.0 27 66210.0 28 68791.0 29 70902.0 30 75985.0 31 84882.0 32 101216.0 33 131681.0 34 223866.0 35 254316.0 36 274572.0 37 272788.0 38 335326.0 39 414712.0 40 198.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 27.952295650492687 16.397352558891708 22.56089948185393 33.08945230876167 2 35.20011772666983 18.867655732463014 25.94209710806471 19.990129432802455 3 24.07862638650746 20.55719782346557 36.64841407538186 18.71576171464511 4 22.48505031758413 23.19602860351043 34.0701295580436 20.248791520861847 5 20.761223465023086 31.01929457146201 32.50316723096932 15.716314732545591 6 76.86815747977258 2.360717177722263 19.28748751013181 1.483637832373347 7 72.53199617544874 7.525192059242189 18.186422216838594 1.756389548470473 8 70.8976384609273 3.884745277137113 21.760686885021983 3.4569293769135965 9 41.56287633494333 16.758360139502972 27.386831911911646 14.291931613642047 10 26.895299582673044 18.120357516483885 34.30311721278978 20.68122568805329 11 23.94884525713767 15.554284010111658 41.42174522743204 19.07512550531864 12 21.643742972308793 16.79511058596806 41.723458956717835 19.837687485005308 13 18.55220461584042 19.57836005339969 43.762854339468454 18.106580991291434 14 16.894011947221816 17.926077200985805 45.65004260155588 19.52986825023649 15 21.481868801297498 17.252045050802895 42.47928922523092 18.786796922668685 16 23.018029635967064 16.83726205651428 38.70240787829379 21.442300429224865 17 21.57149449075975 18.659559753916817 40.31829252494353 19.4506532303799 18 23.457626030744354 21.23721806556452 36.73659166418467 18.568564239506454 19 24.835669928546018 20.106838518381682 35.90714308917443 19.150348463897874 20 23.172076235846284 21.96839148501157 38.56358590426645 16.29594637487569 21 22.71404591105296 18.601166073271543 37.93424918524769 20.750538830427804 22 23.298882888185886 20.111378509638282 36.902888412885595 19.68685018929024 23 22.157466465706825 19.41793398304783 38.25948476578537 20.165114785459973 24 24.617202418249825 17.956448176978252 36.71209136654128 20.71425803823064 25 19.879486714850586 20.269378032939205 37.006525454674254 22.84460979753596 26 18.185522046158404 21.350404744134313 38.0601556669071 22.40391754280018 27 19.378756989531798 21.318781356760734 38.01733885281466 21.285122800892815 28 21.961307533137045 21.994300745458737 35.77505282632068 20.269338895083543 29 20.707174086356115 20.558371959135382 38.18144388159859 20.55301007290991 30 24.073655878838593 20.620601149635373 35.042039927657584 20.263703043868446 31 25.56101180749967 20.951942235656073 34.472271024953905 19.014774931890347 32 25.556628367665713 20.709052703427812 33.82665295798042 19.907665970926054 33 21.159842524923963 22.13918908711343 36.65326716948375 20.04770121847886 34 21.25346027566357 24.465582365421547 34.36425054333128 19.9167068155836 35 24.27498100835554 25.304150060800655 32.017936096492036 18.402932834351766 36 23.36189483579908 24.486129739643243 31.79778565840245 20.354189766155226 37 22.025963270687974 27.837308630562518 30.96434502211485 19.17238307663466 38 21.751841729642738 24.05901832082161 32.17926233752409 22.009877612011564 39 21.43670371586543 22.733223460326542 35.36128741627923 20.46878540752879 40 19.75870729228268 23.21285788144439 34.75277203647178 22.275662789801146 41 20.900515093318344 25.51850809625251 30.93878800236862 22.64218880806052 42 19.523762744753473 22.38383982284641 32.67228190527778 25.420115527122338 43 20.288046790089197 21.842054486939894 35.526214340032034 22.343684382938868 44 22.379769485857732 23.40678595624153 33.02976707887961 21.18367747902113 45 22.21930427765021 24.141207817708395 32.85078966494473 20.788698239696664 46 20.339004278159003 25.12936039742144 32.54246163805233 21.989173686367227 47 20.649484887112727 25.285598717217646 33.26424197214089 20.80067442352874 48 22.009016579187033 23.89510898131598 33.38251657194654 20.713357867550453 49 20.37442403753164 23.519229015553776 34.81590139765196 21.290445549262625 50 20.74200677789384 22.985897456469896 35.074093831443435 21.198001934192824 51 20.006019402200565 21.456937987241844 35.22035199804624 23.316690612511355 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1170.0 1 14369.5 2 27569.0 3 108013.5 4 188458.0 5 113082.0 6 37706.0 7 33879.0 8 30052.0 9 29899.0 10 29746.0 11 29984.5 12 30223.0 13 28981.0 14 27739.0 15 26304.5 16 24870.0 17 23926.0 18 22982.0 19 21439.5 20 19897.0 21 18603.0 22 17309.0 23 16607.0 24 15905.0 25 16270.0 26 18496.0 27 20357.0 28 20703.0 29 21049.0 30 23428.5 31 25808.0 32 28315.0 33 30822.0 34 35603.0 35 40384.0 36 44801.0 37 49218.0 38 53079.0 39 56940.0 40 61010.0 41 65080.0 42 73668.0 43 82256.0 44 88569.0 45 94882.0 46 105020.0 47 115158.0 48 128980.5 49 142803.0 50 143702.0 51 144601.0 52 136897.5 53 129194.0 54 127366.5 55 125539.0 56 130082.5 57 134626.0 58 137592.0 59 140558.0 60 142369.5 61 144181.0 62 142260.0 63 140339.0 64 129167.5 65 117996.0 66 100531.5 67 83067.0 68 67568.5 69 52070.0 70 43912.5 71 35755.0 72 32209.0 73 28663.0 74 24804.0 75 16112.0 76 11279.0 77 8476.5 78 5674.0 79 4362.5 80 3051.0 81 2275.0 82 1499.0 83 988.5 84 478.0 85 367.5 86 257.0 87 205.0 88 153.0 89 106.5 90 60.0 91 54.5 92 49.0 93 31.0 94 13.0 95 9.0 96 5.0 97 3.0 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2555071.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 29.32728635744668 #Duplication Level Percentage of deduplicated Percentage of total 1 77.56348554376282 22.74726551423608 2 8.546651012139073 5.013001632603282 3 2.8907565682104486 2.54334136996733 4 1.528565458603629 1.7931470768228173 5 1.0056301051134804 1.4746201031166122 6 0.7294067692012695 1.2834912714855389 7 0.6030774239090002 1.2380637014683358 8 0.4939528954120975 1.1589038408672396 9 0.40506215084293645 1.0691436321300654 >10 5.5693572442035695 37.563678086615305 >50 0.5725103629229248 10.84555880894276 >100 0.08462274018241808 4.361889977207028 >500 0.00437905082420515 0.883195812426393 >1k 0.001836376152086031 1.0047445020299877 >5k 2.8251940801323557E-4 0.4446842652368733 >10k+ 4.237791120198533E-4 6.575270404844495 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 131429 5.143849231586911 No Hit GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 13796 0.5399458566904795 No Hit CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 13492 0.5280479485697267 No Hit CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5555 0.21741078819336135 No Hit GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 5179 0.2026949544650618 No Hit CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA 3232 0.12649354949431935 No Hit GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 3121 0.12214924751601813 No Hit TGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 2588 0.10128877044904036 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.06011574629432998 0.0 2 0.0 0.0 0.0 0.18183447739808403 0.0 3 0.0 0.0 0.0 0.2952559831018394 0.0 4 0.0 0.0 0.0 0.3748623815150342 0.0 5 0.0 0.0 0.0 0.801151905367796 0.0 6 0.0 0.0 0.0 0.9873698225998416 0.0 7 0.0 0.0 0.0 1.4299798322629782 0.0 8 0.0 0.0 0.0 1.9100447697930898 0.0 9 0.0 0.0 0.0 2.3404437684901906 0.0 10 0.0 0.0 0.0 2.6230973620693905 0.0 11 0.0 0.0 0.0 2.9124826668221746 0.0 12 0.0 0.0 0.0 3.1361946497768556 0.0 13 0.0 0.0 0.0 3.253921319603252 0.0 14 0.0 0.0 0.0 3.344016663333426 0.0 15 0.0 0.0 0.0 3.5815834471918784 0.0 16 0.0 0.0 0.0 3.8187979903493874 0.0 17 0.0 0.0 0.0 4.145481671546505 0.0 18 0.0 0.0 0.0 4.328294595336098 0.0 19 0.0 0.0 0.0 4.5451183156945545 0.0 20 0.0 0.0 0.0 4.792626114890741 0.0 21 0.0 0.0 0.0 5.05097510010485 0.0 22 0.0 0.0 0.0 5.28302344631519 0.0 23 0.0 0.0 0.0 5.511118869103833 0.0 24 2.348271339622265E-4 0.0 0.0 5.700546090500029 0.0 25 2.348271339622265E-4 0.0 0.0 5.9040238020782985 0.0 26 2.348271339622265E-4 0.0 0.0 6.107540651512228 0.0 27 2.348271339622265E-4 0.0 0.0 6.311840258059365 0.0 28 2.348271339622265E-4 0.0 0.0 6.518762100935747 0.0 29 2.348271339622265E-4 0.0 0.0 6.738325471190429 0.0 30 2.348271339622265E-4 0.0 0.0 6.96626434255643 0.0 31 2.348271339622265E-4 0.0 0.0 7.192363734706394 0.0 32 2.348271339622265E-4 0.0 0.0 7.444528938726164 0.0 33 2.348271339622265E-4 0.0 0.0 7.6890231230365025 0.0 34 2.348271339622265E-4 0.0 0.0 7.968349998884571 0.0 35 2.348271339622265E-4 0.0 0.0 8.222354682120379 0.0 36 2.348271339622265E-4 0.0 0.0 8.507982752729768 0.0 37 2.348271339622265E-4 0.0 0.0 8.841828661512732 0.0 38 2.348271339622265E-4 0.0 0.0 9.234733594487198 0.0 39 2.348271339622265E-4 0.0 0.0 9.632961275831473 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 35300 0.0 43.98017 1 CGTTTTA 1700 0.0 41.823532 1 ACCCGCA 4335 0.0 41.055363 31 AATGCGG 340 0.0 41.02941 1 CGCACTT 4325 0.0 40.99422 34 TCACGAC 380 0.0 40.855267 24 CCCGCAC 4410 0.0 40.714287 32 CCGCACT 4370 0.0 40.572083 33 CAACGCA 4640 0.0 40.199352 16 TCAACGC 4650 0.0 40.16129 15 ATCAACG 4650 0.0 40.1129 14 CATGCGG 405 0.0 40.0 1 CACTTAC 4445 0.0 39.938133 36 CTTACTG 4400 0.0 39.886364 38 TATGACC 4570 0.0 39.830414 27 AACGCAA 4705 0.0 39.73964 17 CTTATGA 4595 0.0 39.662678 25 CACGACG 375 0.0 39.6 25 GCTTATG 4655 0.0 39.53813 24 CACGACC 575 0.0 39.52174 26 >>END_MODULE