SRR1043420_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043420_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	3455155
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	92024	2.6633826847131314	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	34013	0.9844131449963895	No Hit
GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	13330	0.38580034759656223	No Hit
GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	10965	0.31735189882943027	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	10016	0.289885692537672	No Hit
AGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	5686	0.16456569965746834	No Hit
TGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	5346	0.154725330701517	No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA	4334	0.12543576192674424	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4090	0.11837385008776741	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATACGTT	25	3.8924372E-5	45.0	21
CGTTTTT	25610	0.0	43.629444	1
ACGTAGG	265	0.0	43.301888	1
CACGACG	1145	0.0	43.231438	25
CGACGGT	1160	0.0	42.672417	27
CGGGTAC	910	0.0	42.52747	5
ACGGGTA	435	0.0	41.896553	4
CACTTAC	10150	0.0	41.80788	36
GGTACCT	3940	0.0	41.459393	7
ACTTACT	10225	0.0	41.391197	37
CGCACTT	10310	0.0	41.311832	34
ACTACGG	180	0.0	41.25	1
AGGGTAC	1775	0.0	41.19718	5
CTTACTG	10290	0.0	41.086006	38
GCACTTA	10350	0.0	41.04348	35
CATATGC	3865	0.0	41.0414	32
CGGTCTA	1205	0.0	40.892117	30
ACCCGCA	10440	0.0	40.86207	31
CCCGCAC	10505	0.0	40.823418	32
CCGCACT	10430	0.0	40.81496	33