SRR1043419_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043419_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	3520485
Sequences flagged as poor quality	0
Sequence length	51
%GC	51

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	76621	2.176433076692558	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	35446	1.0068499084643168	No Hit
GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	13286	0.3773911833170714	No Hit
GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	9822	0.27899564974712293	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8351	0.23721163419244792	No Hit
AGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	6637	0.18852516059577018	No Hit
TGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	5512	0.156569336327239	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCTATCG	25	3.8924518E-5	45.0	33
CGTTTTT	21515	0.0	43.420868	1
ACGGGAT	535	0.0	42.897194	4
GCACTTA	10530	0.0	41.474358	35
CACTTAC	10530	0.0	41.474358	36
ACTTACT	10525	0.0	41.19478	37
CGCACTT	10615	0.0	41.14225	34
ACCCGCA	10610	0.0	41.013195	31
CACGACG	755	0.0	40.827816	25
CATGCGG	735	0.0	40.714287	1
ATAGCGG	525	0.0	40.714287	1
CTTACTG	10650	0.0	40.69014	38
CCGCACT	10725	0.0	40.636364	33
CCCGCAC	10785	0.0	40.598053	32
ACGGGTA	305	0.0	40.573772	4
ATTACGG	245	0.0	40.408165	1
ATCAACG	11200	0.0	40.17857	14
TCAACGC	11210	0.0	40.142727	15
TTATGAC	11040	0.0	40.108692	26
CGAATTA	45	1.9303116E-8	40.0	16