##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1043419_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 3520485 Sequences flagged as poor quality 0 Sequence length 51 %GC 51 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.50872649649125 31.0 31.0 33.0 30.0 34.0 2 30.590414104874753 31.0 31.0 34.0 26.0 34.0 3 31.58025215275736 31.0 31.0 34.0 28.0 34.0 4 35.20512145343611 37.0 35.0 37.0 33.0 37.0 5 35.52331937218877 37.0 35.0 37.0 33.0 37.0 6 35.70048047357111 37.0 35.0 37.0 35.0 37.0 7 33.7348101184922 37.0 35.0 37.0 32.0 37.0 8 34.72173834002985 37.0 35.0 37.0 31.0 37.0 9 36.750571015073206 39.0 37.0 39.0 32.0 39.0 10 36.681318057029074 39.0 35.0 39.0 32.0 39.0 11 36.4969215889288 39.0 35.0 39.0 32.0 39.0 12 36.49108347287377 39.0 35.0 39.0 32.0 39.0 13 36.53349325448056 39.0 35.0 39.0 33.0 39.0 14 37.733565403630465 40.0 36.0 41.0 33.0 41.0 15 37.82560811933583 40.0 36.0 41.0 33.0 41.0 16 37.658551875664855 40.0 36.0 41.0 32.0 41.0 17 37.58953496464265 40.0 36.0 41.0 32.0 41.0 18 37.47261953963729 39.0 36.0 41.0 32.0 41.0 19 37.362430460575744 39.0 35.0 41.0 32.0 41.0 20 37.1428013469735 39.0 35.0 41.0 32.0 41.0 21 37.064012770967636 39.0 35.0 41.0 32.0 41.0 22 37.018371900462576 39.0 35.0 41.0 32.0 41.0 23 36.95081217502702 38.0 35.0 41.0 32.0 41.0 24 36.83487417216662 38.0 35.0 41.0 32.0 41.0 25 36.718142528657275 38.0 35.0 40.0 31.0 41.0 26 36.43755732519809 38.0 35.0 40.0 31.0 41.0 27 36.33612215362372 38.0 35.0 40.0 31.0 41.0 28 36.141356659664794 38.0 35.0 40.0 30.0 41.0 29 36.0739219170086 38.0 35.0 40.0 30.0 41.0 30 35.95806060812644 38.0 35.0 40.0 30.0 41.0 31 35.85044106138785 38.0 35.0 40.0 30.0 41.0 32 35.80779977758746 38.0 35.0 40.0 29.0 41.0 33 35.56935706301831 38.0 34.0 40.0 28.0 41.0 34 35.499575200576054 38.0 34.0 40.0 28.0 41.0 35 35.40777676939399 38.0 34.0 40.0 27.0 41.0 36 35.31679271464017 37.0 34.0 40.0 27.0 41.0 37 35.1996222111442 37.0 34.0 40.0 27.0 41.0 38 35.086772703192885 37.0 34.0 40.0 27.0 41.0 39 34.95844578232829 37.0 34.0 40.0 26.0 41.0 40 34.861157482562774 36.0 34.0 40.0 26.0 41.0 41 34.755863183623845 36.0 34.0 40.0 26.0 41.0 42 34.626535264317276 36.0 34.0 40.0 26.0 41.0 43 34.44866687402446 36.0 34.0 40.0 25.0 41.0 44 34.215116667163755 35.0 33.0 40.0 24.0 41.0 45 33.97348490335849 35.0 33.0 40.0 23.0 41.0 46 33.94852754663065 35.0 33.0 40.0 23.0 41.0 47 33.91246973073312 35.0 33.0 39.0 23.0 41.0 48 33.80506492713362 35.0 33.0 39.0 23.0 41.0 49 33.755655825830814 35.0 33.0 39.0 24.0 41.0 50 33.683702387597165 35.0 33.0 39.0 24.0 41.0 51 33.23965277511479 35.0 33.0 38.0 23.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 3.0 9 2.0 10 8.0 11 12.0 12 24.0 13 34.0 14 80.0 15 174.0 16 348.0 17 813.0 18 1684.0 19 3106.0 20 5157.0 21 8487.0 22 12700.0 23 18973.0 24 27923.0 25 40278.0 26 53837.0 27 64606.0 28 73118.0 29 80201.0 30 92404.0 31 110151.0 32 136220.0 33 183173.0 34 331489.0 35 351694.0 36 355807.0 37 426627.0 38 520596.0 39 620428.0 40 328.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.222090138148577 18.446833319840874 24.432571080405115 25.89850546160543 2 29.15075621682808 21.78617434813669 27.89570187062294 21.16736756441229 3 27.843947637896484 22.52513503111077 29.64511991955654 19.98579741143621 4 24.76974053290953 25.292083335108657 26.84493755831938 23.093238573662436 5 23.31016891138579 35.166092171959264 24.479468027842756 17.044270888812193 6 86.53793440392445 2.1491357014729506 9.907271299267006 1.405658595335586 7 82.34672211357243 7.113082430403765 9.17424729831259 1.3659481577112245 8 81.69252247914704 3.663330478613032 11.675550385813318 2.9685966564266004 9 47.992819171222145 18.235157939886122 18.191044699806987 15.580978189084743 10 30.22549449862732 17.93352336396832 26.539752335260623 25.301229802143737 11 26.467461159470922 15.294511977753064 36.83651542330105 21.40151143947496 12 22.69448669714542 18.045524977382378 36.775359076945364 22.484629248526836 13 19.83402855004353 21.782027192276065 38.388517491197945 19.99542676648246 14 18.643084688615346 18.956081335384187 39.838658593915326 22.56217538208514 15 23.64713952765031 15.231878562186743 37.90577150591467 23.21521040424828 16 24.255407990660377 16.26824144968662 33.07683458387125 26.399515975781746 17 24.53945976193621 19.750602544819817 33.13049196346526 22.579445729778712 18 26.001389013161543 23.286478993661387 28.701926013035134 22.010205980141944 19 27.878800790232027 20.553986169519256 28.107434060931947 23.45977897931677 20 27.990376325989175 21.885933330208765 30.79095635970612 19.33273398409594 21 25.039987388101352 18.084440070047165 31.237911821808645 25.637660720042838 22 25.957446204145167 20.592247943110113 29.817567749898092 23.632738102846627 23 26.276834015767715 19.783580955464945 31.87060873714843 22.06897629161891 24 28.729109767546234 17.32877714292207 29.15339789830094 24.788715191230754 25 23.227907518424306 20.0250249610494 29.811801498941197 26.935266021585093 26 21.47212670981413 19.955744734035225 32.1976375414183 26.374491014732342 27 22.796262446793552 21.028949136269574 31.98698474784014 24.18780366909673 28 24.762355186856354 22.207678771532898 29.74189635803021 23.288069683580527 29 24.17976500396962 19.675215204723212 33.71853594036049 22.426483850946674 30 29.656453585230448 20.376851484951647 28.669941783589476 21.296753146228433 31 29.985385536367858 20.826590654412673 27.441105415873096 21.74691839334637 32 30.418138409906593 19.381363647338365 26.342535190463813 23.857962752291233 33 25.125004083244214 21.9275753198778 29.599700041329534 23.347720555548452 34 25.211497847597702 23.038359771451944 28.932121568477072 22.81802081247328 35 28.803275685026353 24.644928184610926 25.729239011102162 20.82255711926056 36 26.78312789288976 24.07838692680128 25.25592354462524 23.882561635683718 37 26.443686026215136 27.96577744259669 24.256345361505588 21.334191169682587 38 25.366022011171758 23.746841699368126 24.85975653922684 26.027379750233276 39 24.037455066560433 21.664003681310955 30.333689818306286 23.96485143382233 40 22.863582716585924 22.431767213892403 30.042366321685794 24.662283747835883 41 22.668013072062514 26.32623061879258 25.256065570510884 25.749690738634023 42 22.087610087814603 21.392734239742538 27.208949903209355 29.310705769233504 43 23.083268356490656 19.9018601130242 31.006949326584266 26.007922203900886 44 25.968779869819077 22.116356127067718 28.722690197515398 23.192173805597808 45 26.91555282865855 22.719369632309185 28.459288990011324 21.905788549020944 46 24.21862328628016 23.77885433399091 27.801822760216275 24.20069961951265 47 23.166779577245748 25.619083734201396 28.742857873275984 22.47127881527687 48 25.27648889286561 24.46188522320078 28.656108462328344 21.60551742160526 49 23.367007670818083 22.18077906879308 30.69892358581275 23.753289674576088 50 22.70564993175656 23.3333475359219 31.73713280982592 22.223869722495625 51 22.397198113328134 20.7716266366708 30.742837989651996 26.08833726034907 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1235.0 1 10846.5 2 20458.0 3 68641.0 4 116824.0 5 71270.5 6 25717.0 7 22978.0 8 20239.0 9 20100.0 10 19961.0 11 19802.0 12 19643.0 13 18701.5 14 17760.0 15 16924.0 16 16088.0 17 14944.5 18 13801.0 19 13273.5 20 12746.0 21 12296.0 22 11846.0 23 12346.0 24 12846.0 25 13754.5 26 17277.0 27 19891.0 28 23118.0 29 26345.0 30 28942.0 31 31539.0 32 35977.0 33 40415.0 34 48544.5 35 56674.0 36 60856.0 37 65038.0 38 69146.5 39 73255.0 40 81352.0 41 89449.0 42 99643.0 43 109837.0 44 119179.0 45 128521.0 46 136612.5 47 144704.0 48 165676.5 49 186649.0 50 192534.5 51 198420.0 52 183996.0 53 169572.0 54 182253.5 55 194935.0 56 207495.0 57 220055.0 58 230373.0 59 240691.0 60 246340.5 61 251990.0 62 252497.5 63 253005.0 64 230489.5 65 207974.0 66 180598.5 67 153223.0 68 128798.5 69 104374.0 70 89537.0 71 74700.0 72 70146.5 73 65593.0 74 54452.5 75 33266.5 76 23221.0 77 18040.0 78 12859.0 79 9136.5 80 5414.0 81 4298.5 82 3183.0 83 2177.0 84 1171.0 85 727.0 86 283.0 87 237.0 88 191.0 89 147.0 90 103.0 91 74.0 92 45.0 93 31.5 94 18.0 95 13.0 96 8.0 97 4.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 3520485.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 20.64960397250127 #Duplication Level Percentage of deduplicated Percentage of total 1 77.98444959287288 16.103480001063126 2 8.824239363319228 3.6443409642219766 3 2.723852338439768 1.6873941620505812 4 1.2824423422076534 1.0592770593661998 5 0.7627255318545187 0.7874990086255609 6 0.5493181084253671 0.6805920836344408 7 0.4150477825813454 0.5999400637978716 8 0.3320100239798288 0.5484700408067292 9 0.2888924977327364 0.5368964101926954 >10 4.40658138877179 22.924549899322308 >50 1.7658399806047955 26.001179723472262 >100 0.6537656202895709 18.551943523875668 >500 0.006382512925828839 0.9073413421901828 >1k 0.0034139022626526352 1.1956075761292657 >5k 5.937221326352409E-4 0.9293789203084392 >10k+ 4.452915994764307E-4 3.8421092209426746 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 76621 2.176433076692558 No Hit GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 35446 1.0068499084643168 No Hit GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 13286 0.3773911833170714 No Hit GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 9822 0.27899564974712293 No Hit CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 8351 0.23721163419244792 No Hit AGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 6637 0.18852516059577018 No Hit TGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 5512 0.156569336327239 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.02119026213717712 0.0 2 0.0 0.0 0.0 0.07087091693332026 0.0 3 0.0 0.0 0.0 0.11271174284225043 0.0 4 0.0 0.0 0.0 0.13915696274803047 0.0 5 0.0 0.0 0.0 0.3104401808273576 0.0 6 0.0 0.0 0.0 0.35924027513254564 0.0 7 0.0 0.0 0.0 0.5039362474204548 0.0 8 0.0 0.0 0.0 0.6663286450588485 0.0 9 0.0 0.0 0.0 0.7970208650228591 0.0 10 0.0 0.0 0.0 0.9057274778901202 0.0 11 0.0 0.0 0.0 1.0094063744057993 0.0 12 0.0 0.0 0.0 1.0974624235013073 0.0 13 0.0 0.0 0.0 1.1426550603112924 0.0 14 0.0 0.0 0.0 1.178388773137792 0.0 15 0.0 0.0 0.0 1.2849081873662294 0.0 16 0.0 0.0 0.0 1.406880017952072 0.0 17 0.0 0.0 0.0 1.567880561911214 0.0 18 0.0 0.0 0.0 1.6605950600556458 0.0 19 0.0 0.0 0.0 1.758791757385701 0.0 20 0.0 0.0 0.0 1.8799398378348438 0.0 21 0.0 0.0 0.0 2.008473264337158 0.0 22 0.0 0.0 0.0 2.136893070130962 0.0 23 0.0 0.0 0.0 2.2590637369566977 0.0 24 0.0 0.0 0.0 2.356294658264415 0.0 25 0.0 0.0 0.0 2.460456442791263 0.0 26 0.0 0.0 0.0 2.5597041316750393 0.0 27 0.0 0.0 0.0 2.670938805306655 0.0 28 0.0 0.0 0.0 2.786973953872833 0.0 29 0.0 0.0 0.0 2.9071562582996378 0.0 30 0.0 0.0 0.0 3.0275942093205908 0.0 31 0.0 0.0 0.0 3.1574626791479017 0.0 32 0.0 0.0 0.0 3.301249685767728 0.0 33 0.0 0.0 0.0 3.4373956997402346 0.0 34 0.0 0.0 0.0 3.6123715908461476 0.0 35 0.0 0.0 0.0 3.756669890654271 0.0 36 0.0 0.0 0.0 3.9219596163596777 0.0 37 0.0 0.0 0.0 4.117245209111813 0.0 38 0.0 0.0 0.0 4.330539684162836 0.0 39 0.0 0.0 0.0 4.598826582132859 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCTATCG 25 3.8924518E-5 45.0 33 CGTTTTT 21515 0.0 43.420868 1 ACGGGAT 535 0.0 42.897194 4 GCACTTA 10530 0.0 41.474358 35 CACTTAC 10530 0.0 41.474358 36 ACTTACT 10525 0.0 41.19478 37 CGCACTT 10615 0.0 41.14225 34 ACCCGCA 10610 0.0 41.013195 31 CACGACG 755 0.0 40.827816 25 CATGCGG 735 0.0 40.714287 1 ATAGCGG 525 0.0 40.714287 1 CTTACTG 10650 0.0 40.69014 38 CCGCACT 10725 0.0 40.636364 33 CCCGCAC 10785 0.0 40.598053 32 ACGGGTA 305 0.0 40.573772 4 ATTACGG 245 0.0 40.408165 1 ATCAACG 11200 0.0 40.17857 14 TCAACGC 11210 0.0 40.142727 15 TTATGAC 11040 0.0 40.108692 26 CGAATTA 45 1.9303116E-8 40.0 16 >>END_MODULE