SRR1043418_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043418_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1213679
Sequences flagged as poor quality	0
Sequence length	51
%GC	38

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	77425	6.379363900998534	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7845	0.6463817862878075	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3189	0.2627548140818124	No Hit
GTGTTGGGTTAACAGAGAAGTTATAGGTGGATTATTTATAGTGTGATTATT	1686	0.13891646802820184	No Hit
CTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1417	0.11675245266664415	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGCACG	20	7.033443E-4	45.0	26
TCCGAAT	40	6.8157533E-9	45.0	39
CGGTTTA	20	7.033443E-4	45.0	41
CATGACG	25	3.8909362E-5	45.0	41
CCGTGCT	25	3.8909362E-5	45.0	45
ATGCTCG	20	7.033443E-4	45.0	19
TCGATTG	20	7.033443E-4	45.0	15
CGTTAGA	25	3.8909362E-5	45.0	26
TTATACG	20	7.033443E-4	45.0	22
TGTGACG	20	7.033443E-4	45.0	45
CGCCTCC	20	7.033443E-4	45.0	25
GCCGATC	35	1.2120108E-7	45.0	8
CCCAACG	20	7.033443E-4	45.0	28
TACGCAC	25	3.8909362E-5	45.0	14
CCGAGTC	35	1.2120108E-7	45.0	11
ATGACGG	95	0.0	45.0	1
CGCACGG	20	7.033443E-4	45.0	1
CCAACGG	75	0.0	45.0	1
ATACGTT	20	7.033443E-4	45.0	13
CACGTGC	25	3.8909362E-5	45.0	32