##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1043418_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1213679 Sequences flagged as poor quality 0 Sequence length 51 %GC 38 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.583061089464348 31.0 31.0 33.0 30.0 34.0 2 30.651523178698817 31.0 31.0 34.0 26.0 34.0 3 31.53732164765148 31.0 31.0 34.0 28.0 34.0 4 35.15548921914279 37.0 35.0 37.0 32.0 37.0 5 35.472166034017235 37.0 35.0 37.0 33.0 37.0 6 35.87607925983724 37.0 35.0 37.0 35.0 37.0 7 33.89072234091552 37.0 35.0 37.0 32.0 37.0 8 34.88220608579369 37.0 35.0 37.0 32.0 37.0 9 36.85862159599037 39.0 37.0 39.0 32.0 39.0 10 36.791821395937475 39.0 35.0 39.0 32.0 39.0 11 36.50849689250617 39.0 35.0 39.0 32.0 39.0 12 36.45574076835803 39.0 35.0 39.0 32.0 39.0 13 36.48946385329234 39.0 35.0 39.0 32.0 39.0 14 37.85284824076218 40.0 36.0 41.0 33.0 41.0 15 38.004168317981936 40.0 36.0 41.0 33.0 41.0 16 37.98060607458809 40.0 36.0 41.0 33.0 41.0 17 37.919631138052154 40.0 36.0 41.0 33.0 41.0 18 37.62598018092098 39.0 36.0 41.0 33.0 41.0 19 37.317621051365315 38.0 35.0 41.0 33.0 41.0 20 37.000009887293096 38.0 35.0 41.0 33.0 41.0 21 36.88708381705541 38.0 35.0 41.0 33.0 41.0 22 36.78729383963964 38.0 35.0 40.0 32.0 41.0 23 36.69457162890682 38.0 35.0 40.0 32.0 41.0 24 36.52311195958734 37.0 35.0 40.0 32.0 41.0 25 36.412464910408765 37.0 35.0 40.0 32.0 41.0 26 36.15421623015641 37.0 35.0 40.0 31.0 41.0 27 36.0569038436028 36.0 35.0 40.0 31.0 41.0 28 35.95562335675248 36.0 35.0 40.0 31.0 41.0 29 35.88880667787776 36.0 35.0 40.0 31.0 41.0 30 35.706154592771234 36.0 35.0 40.0 31.0 41.0 31 35.22864859653994 36.0 34.0 40.0 29.0 41.0 32 35.041284392331086 36.0 34.0 40.0 27.0 41.0 33 34.88477183835265 36.0 34.0 40.0 25.0 41.0 34 34.621128815774185 36.0 34.0 40.0 24.0 41.0 35 34.40819936737803 36.0 34.0 40.0 23.0 41.0 36 34.21272263918219 36.0 34.0 40.0 22.0 41.0 37 34.124250316599365 35.0 34.0 40.0 21.0 41.0 38 34.04251700820398 35.0 34.0 40.0 21.0 41.0 39 33.91951084265279 35.0 33.0 40.0 21.0 41.0 40 33.872225687352255 35.0 33.0 40.0 21.0 41.0 41 33.81516611888316 35.0 33.0 40.0 20.0 41.0 42 33.7330908749348 35.0 33.0 40.0 20.0 41.0 43 33.586097312386556 35.0 33.0 40.0 18.0 41.0 44 33.38468573650858 35.0 33.0 40.0 18.0 41.0 45 33.20302567647624 35.0 33.0 40.0 18.0 41.0 46 33.18620986273965 35.0 33.0 40.0 18.0 41.0 47 33.16803207437881 35.0 33.0 40.0 18.0 41.0 48 33.10684208921799 35.0 33.0 40.0 18.0 41.0 49 33.01764881818009 35.0 33.0 40.0 18.0 41.0 50 32.90031136733848 35.0 33.0 39.0 17.0 41.0 51 32.476939124760335 35.0 32.0 39.0 15.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 0.0 10 2.0 11 3.0 12 5.0 13 18.0 14 17.0 15 48.0 16 133.0 17 296.0 18 635.0 19 1177.0 20 2042.0 21 3284.0 22 5413.0 23 8484.0 24 13932.0 25 21240.0 26 26938.0 27 29282.0 28 28576.0 29 28998.0 30 31481.0 31 37067.0 32 45953.0 33 60387.0 34 104570.0 35 148159.0 36 140077.0 37 110425.0 38 145540.0 39 219382.0 40 114.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 25.05028100510926 18.30871260028393 24.891013192120816 31.749993202485992 2 32.360368763074916 20.441896086197424 29.280971327673953 17.916763823053707 3 20.83681105135707 20.776416169349556 40.56690442860098 17.8198683506924 4 21.78500245946416 24.701012376419136 36.31009517343548 17.203889990681226 5 19.52287219272971 30.420646645447434 34.56861328242476 15.487867879398095 6 76.88383831309596 2.0420556011927373 19.676125235750145 1.3979808499611512 7 73.52290020672682 7.086882116276215 17.865514687161927 1.5247029898350388 8 72.47171616218127 4.030637425546623 20.714043828722424 2.7836025835496865 9 40.14397546633006 22.26000449871836 26.945510303795324 10.650509731156262 10 29.325381752506225 23.870809332615956 36.21361167161993 10.590197243257895 11 27.874256702142823 21.62120297047242 38.068220674494654 12.436319652890097 12 20.085211987683728 29.238126390915554 35.874889488901104 14.801772132499616 13 14.281206150885037 31.58421625487464 36.953922742339614 17.18065485190071 14 12.94131314787518 25.207159388932325 45.0198116635453 16.83171579964719 15 15.28880371168983 22.922123559853965 44.93313306071869 16.855939667737516 16 17.305317139045826 23.97923998025837 36.43302718428843 22.28241569640737 17 17.82843733804408 24.551631856528786 40.8687964445294 16.751134360897733 18 21.324913753966246 25.95521550591219 36.39356040600521 16.32631033411635 19 21.047410394346446 25.938159925317976 36.95128613084679 16.063143549488785 20 17.804543046390357 28.759169434422116 37.360702459216974 16.07558505997055 21 18.31925904625523 26.21129639715279 35.814165030456984 19.655279526135 22 14.995315894894778 29.20467438260034 36.24772283280834 19.552286889696536 23 14.391696651256222 26.284627154296974 44.40778822077337 14.915887973673433 24 15.243239769329453 26.93051457592988 41.22144323169471 16.60480242304596 25 14.591749548274297 30.188954410515468 37.62873049628443 17.5905655449258 26 14.588288995689963 31.575729661632113 36.91882285184139 16.917158490836538 27 14.705206236574911 29.2373848439332 40.45155267578989 15.605856243702002 28 13.635318729252132 26.918567430103018 40.544905201457716 18.901208639187132 29 15.471636239895393 30.41356075206047 38.841571782983806 15.273231225060332 30 19.617213447707343 29.241092578844984 35.84333254509636 15.298361428351317 31 19.914903364069083 27.933415672513078 36.19153005036752 15.96015091305032 32 19.013182233523032 29.489346029716256 35.378629769486004 16.118841967274708 33 17.05706368817455 29.02538480108826 35.06083569049147 18.856715820245714 34 16.735314691940786 28.857630394857285 36.57894715159445 17.828107761607477 35 22.525972683057052 28.34802282975976 33.83233952305346 15.293664964129725 36 16.852726297480636 31.84540558088259 35.11035455009109 16.191513571545688 37 18.014812812943127 30.967084377335357 34.658175679071654 16.35992713064987 38 17.451401894570147 32.29783163422948 33.72176662857312 16.52899984262725 39 19.630561293389768 28.996052498230583 33.81157620754747 17.561810000832182 40 15.439008172671686 28.73197937840236 35.96272160925583 19.86629083967013 41 17.276149624406454 29.752348026125524 32.704364168779385 20.267138180688633 42 17.559338177557656 29.208794088057882 33.386093027892876 19.845774706491586 43 17.55455931922691 29.91499399758915 34.13620899760151 18.394237685582432 44 15.054392471155884 34.64688768611799 32.700986010304206 17.597733832421916 45 18.170784861565537 31.577871908470033 33.74096445600525 16.51037877395918 46 17.283812276557477 31.112098009440718 32.79450332419033 18.809586389811475 47 17.11029028268595 29.94539742386578 35.35778405987086 17.58652823357741 48 17.86897523974626 28.1492882384881 35.476761153484574 18.50497536828107 49 17.794902935619714 30.16143477805911 34.08594859101954 17.957713695301642 50 16.004314155555136 30.905206401363127 33.95189337543123 19.138586067650508 51 15.88978634383556 29.04103968182691 35.76728278235019 19.301891191987337 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1096.0 1 7554.0 2 14012.0 3 55222.0 4 96432.0 5 57207.0 6 17982.0 7 17885.0 8 17788.0 9 20674.5 10 23561.0 11 25849.5 12 28138.0 13 27330.5 14 26523.0 15 23424.5 16 20326.0 17 17592.5 18 14859.0 19 12921.5 20 10984.0 21 10155.0 22 9326.0 23 8726.5 24 8127.0 25 8828.0 26 9833.5 27 10138.0 28 11268.0 29 12398.0 30 15948.5 31 19499.0 32 21055.5 33 22612.0 34 25956.5 35 29301.0 36 33195.5 37 37090.0 38 40914.0 39 44738.0 40 49997.0 41 55256.0 42 65409.0 43 75562.0 44 77297.0 45 79032.0 46 79619.5 47 80207.0 48 82240.0 49 84273.0 50 84018.5 51 83764.0 52 79756.5 53 75749.0 54 65763.5 55 55778.0 56 49997.5 57 44217.0 58 39072.5 59 33928.0 60 28624.5 61 23321.0 62 19550.0 63 15779.0 64 13484.5 65 11190.0 66 8980.5 67 6771.0 68 5347.0 69 3923.0 70 3588.0 71 3253.0 72 3193.5 73 3134.0 74 2576.5 75 1489.5 76 960.0 77 739.0 78 518.0 79 454.5 80 391.0 81 251.5 82 112.0 83 74.5 84 37.0 85 30.5 86 24.0 87 15.0 88 6.0 89 9.0 90 12.0 91 7.0 92 2.0 93 1.0 94 0.0 95 1.0 96 2.0 97 1.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1213679.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 33.387954652562904 #Duplication Level Percentage of deduplicated Percentage of total 1 79.25012673133102 26.459996375155438 2 9.01520726913532 6.019986629706913 3 3.2824587797398377 3.28783754660582 4 1.7653363732929912 2.3576388311210508 5 1.1074169768367959 1.8487193902052623 6 0.7305914138948244 1.463577179800333 7 0.5373716577157633 1.2559218377570525 8 0.4106196608290747 1.0967800492169526 9 0.32004840590532463 0.9617185496692823 >10 2.7054161175572644 19.89562990709697 >50 0.6257265952448714 14.800151678857004 >100 0.24460522139382362 11.880505596098027 >500 0.0032986181300025032 0.7162953242547362 >1k 0.0012686992807701934 0.7312905072698856 >5k 2.537398561540387E-4 0.6646170099087411 >10k+ 2.537398561540387E-4 6.559333587276517 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 77425 6.379363900998534 No Hit CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 7845 0.6463817862878075 No Hit CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3189 0.2627548140818124 No Hit GTGTTGGGTTAACAGAGAAGTTATAGGTGGATTATTTATAGTGTGATTATT 1686 0.13891646802820184 No Hit CTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1417 0.11675245266664415 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.08264129147822448 0.0 2 0.0 0.0 0.0 0.2825294002779977 0.0 3 0.0 0.0 0.0 0.45712251756848393 0.0 4 0.0 0.0 0.0 0.5657179534292016 0.0 5 0.0 0.0 0.0 1.261371416989171 0.0 6 0.0 0.0 0.0 1.4680158427393075 0.0 7 0.0 0.0 0.0 2.028048602637106 0.0 8 0.0 0.0 0.0 2.6968415866139233 0.0 9 0.0 0.0 0.0 3.1887344182440334 0.0 10 0.0 0.0 0.0 3.5516804690531845 0.0 11 0.0 0.0 0.0 3.9419813641003922 0.0 12 0.0 0.0 0.0 4.249311391232772 0.0 13 0.0 0.0 0.0 4.391276441299553 0.0 14 0.0 0.0 0.0 4.501602153452437 0.0 15 0.0 0.0 0.0 4.865289751243945 0.0 16 0.0 0.0 0.0 5.310135546548964 0.0 17 0.0 0.0 0.0 5.82831209899817 0.0 18 0.0 0.0 0.0 6.1025196942519395 0.0 19 0.0 0.0 0.0 6.418089132299397 0.0 20 0.0 0.0 0.0 6.801633710396241 0.0 21 0.0 0.0 0.0 7.178339577433571 0.0 22 8.239410915077216E-5 0.0 0.0 7.563284855385979 0.0 23 8.239410915077216E-5 0.0 0.0 7.853559301924149 0.0 24 1.6478821830154432E-4 0.0 0.0 8.13856052547667 0.0 25 1.6478821830154432E-4 0.0 0.0 8.415404732223266 0.0 26 1.6478821830154432E-4 0.0 0.0 8.722734759355646 0.0 27 1.6478821830154432E-4 0.0 0.0 8.999990936647993 0.0 28 1.6478821830154432E-4 0.0 0.0 9.297516064791433 0.0 29 1.6478821830154432E-4 0.0 0.0 9.649915669629284 0.0 30 1.6478821830154432E-4 0.0 0.0 9.989297005221315 0.0 31 1.6478821830154432E-4 0.0 0.0 10.29390802675172 0.0 32 1.6478821830154432E-4 0.0 0.0 10.623154886918204 0.0 33 1.6478821830154432E-4 0.0 0.0 10.939218689620567 0.0 34 1.6478821830154432E-4 0.0 0.0 11.321692144298451 0.0 35 1.6478821830154432E-4 0.0 0.0 11.64278198765901 0.0 36 1.6478821830154432E-4 0.0 0.0 11.975983765064733 0.0 37 2.471823274523165E-4 0.0 0.0 12.332420681250973 0.0 38 2.471823274523165E-4 0.0 0.0 12.70657233090463 0.0 39 2.471823274523165E-4 0.0 0.0 13.080641586449135 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCGCACG 20 7.033443E-4 45.0 26 TCCGAAT 40 6.8157533E-9 45.0 39 CGGTTTA 20 7.033443E-4 45.0 41 CATGACG 25 3.8909362E-5 45.0 41 CCGTGCT 25 3.8909362E-5 45.0 45 ATGCTCG 20 7.033443E-4 45.0 19 TCGATTG 20 7.033443E-4 45.0 15 CGTTAGA 25 3.8909362E-5 45.0 26 TTATACG 20 7.033443E-4 45.0 22 TGTGACG 20 7.033443E-4 45.0 45 CGCCTCC 20 7.033443E-4 45.0 25 GCCGATC 35 1.2120108E-7 45.0 8 CCCAACG 20 7.033443E-4 45.0 28 TACGCAC 25 3.8909362E-5 45.0 14 CCGAGTC 35 1.2120108E-7 45.0 11 ATGACGG 95 0.0 45.0 1 CGCACGG 20 7.033443E-4 45.0 1 CCAACGG 75 0.0 45.0 1 ATACGTT 20 7.033443E-4 45.0 13 CACGTGC 25 3.8909362E-5 45.0 32 >>END_MODULE