FastQCFastQC Report
Thu 26 May 2016
SRR1043417_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1043417_1.fastq.gz
File typeConventional base calls
EncodingIllumina 1.5
Total Sequences783090
Sequences flagged as poor quality0
Sequence length51
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT558767.135322887535277No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT57050.7285241798516134No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT22530.28770639390108416No Hit
TTTTTGGGATTATTTTACTTCTACTCACAATTCTAGAATTTGCAGTAGCAT10880.1389367761049177No Hit
CTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT10070.12859313744269496No Hit
CCTGTCTCTTATACACATCTGACGCAAGGAGCTTCGTATGCCGTCTTCTGC9540.12182507757728997No Hit
CTGTCTCTTATACACATCTGACGCAAGGAGCTTCGTATGCCGTCTTCTGCT8860.1131415290707326No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT8570.10943825103117137No Hit
GCGAAGGGTCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCA7860.10037160479638356No Hit

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACATCGA453.8380676E-1045.00000412
TTACCGG453.8380676E-1045.0000041
CGGGTTC750.045.05
GTGCAAC207.0319074E-445.033
AACCGTA207.0319074E-445.037
ATGGGCG1500.045.04
TGTCAAC207.0319074E-445.026
CGGCGTA207.0319074E-445.014
GCGACAA207.0319074E-445.08
GATCGTC207.0319074E-445.08
GGTCGTA253.8896633E-545.07
GGTAACC207.0319074E-445.07
TTTACGG207.0319074E-445.01
CGACGGT1500.045.027
TTAGCCG207.0319074E-445.011
GCAACTC253.8896633E-545.08
GCAACCG207.0319074E-445.035
TCGGGTA207.0319074E-445.04
ACATTGC207.0319074E-445.036
TAAACCG207.0319074E-445.019