SRR1043417_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043417_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	783090
Sequences flagged as poor quality	0
Sequence length	51
%GC	37

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	55876	7.135322887535277	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5705	0.7285241798516134	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2253	0.28770639390108416	No Hit
TTTTTGGGATTATTTTACTTCTACTCACAATTCTAGAATTTGCAGTAGCAT	1088	0.1389367761049177	No Hit
CTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1007	0.12859313744269496	No Hit
CCTGTCTCTTATACACATCTGACGCAAGGAGCTTCGTATGCCGTCTTCTGC	954	0.12182507757728997	No Hit
CTGTCTCTTATACACATCTGACGCAAGGAGCTTCGTATGCCGTCTTCTGCT	886	0.1131415290707326	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	857	0.10943825103117137	No Hit
GCGAAGGGTCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCA	786	0.10037160479638356	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACATCGA	45	3.8380676E-10	45.000004	12
TTACCGG	45	3.8380676E-10	45.000004	1
CGGGTTC	75	0.0	45.0	5
GTGCAAC	20	7.0319074E-4	45.0	33
AACCGTA	20	7.0319074E-4	45.0	37
ATGGGCG	150	0.0	45.0	4
TGTCAAC	20	7.0319074E-4	45.0	26
CGGCGTA	20	7.0319074E-4	45.0	14
GCGACAA	20	7.0319074E-4	45.0	8
GATCGTC	20	7.0319074E-4	45.0	8
GGTCGTA	25	3.8896633E-5	45.0	7
GGTAACC	20	7.0319074E-4	45.0	7
TTTACGG	20	7.0319074E-4	45.0	1
CGACGGT	150	0.0	45.0	27
TTAGCCG	20	7.0319074E-4	45.0	11
GCAACTC	25	3.8896633E-5	45.0	8
GCAACCG	20	7.0319074E-4	45.0	35
TCGGGTA	20	7.0319074E-4	45.0	4
ACATTGC	20	7.0319074E-4	45.0	36
TAAACCG	20	7.0319074E-4	45.0	19