##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1043417_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 783090 Sequences flagged as poor quality 0 Sequence length 51 %GC 37 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.538996794749007 31.0 31.0 33.0 30.0 34.0 2 30.56882095289175 31.0 31.0 34.0 26.0 34.0 3 31.46290975494515 31.0 31.0 34.0 28.0 34.0 4 35.084797405151384 37.0 35.0 37.0 32.0 37.0 5 35.39767587378207 37.0 35.0 37.0 33.0 37.0 6 35.83574940300604 37.0 35.0 37.0 35.0 37.0 7 33.781823289787894 37.0 35.0 37.0 32.0 37.0 8 34.7952661890715 37.0 35.0 37.0 31.0 37.0 9 36.7690980602485 39.0 37.0 39.0 32.0 39.0 10 36.74873896997791 39.0 35.0 39.0 32.0 39.0 11 36.43557573203591 38.0 35.0 39.0 32.0 39.0 12 36.314745431559594 39.0 35.0 39.0 32.0 39.0 13 36.38580878315392 39.0 35.0 39.0 32.0 39.0 14 37.750884317256 40.0 35.0 41.0 33.0 41.0 15 37.917625049483455 40.0 36.0 41.0 33.0 41.0 16 37.87783907341429 40.0 36.0 41.0 33.0 41.0 17 37.83584134646082 40.0 36.0 41.0 33.0 41.0 18 37.55070681530859 39.0 36.0 41.0 33.0 41.0 19 37.229587914543664 38.0 35.0 41.0 33.0 41.0 20 36.914989337113234 38.0 35.0 41.0 33.0 41.0 21 36.80934247659911 38.0 35.0 41.0 32.0 41.0 22 36.717585462718205 38.0 35.0 40.0 32.0 41.0 23 36.63089810877422 37.0 35.0 40.0 32.0 41.0 24 36.447579460853795 37.0 35.0 40.0 32.0 41.0 25 36.31863004252385 37.0 35.0 40.0 32.0 41.0 26 36.05004150225389 36.0 35.0 40.0 31.0 41.0 27 35.96161360763131 36.0 35.0 40.0 31.0 41.0 28 35.880167030609506 36.0 35.0 40.0 31.0 41.0 29 35.8115389035743 36.0 35.0 40.0 31.0 41.0 30 35.65249588169942 36.0 35.0 40.0 31.0 41.0 31 35.207267363904535 35.0 34.0 40.0 29.0 41.0 32 35.05084856146803 35.0 34.0 40.0 27.0 41.0 33 34.91089529939087 35.0 34.0 40.0 27.0 41.0 34 34.744099656489034 35.0 34.0 40.0 25.0 41.0 35 34.528086171449004 35.0 34.0 40.0 24.0 41.0 36 34.34962520272255 35.0 34.0 40.0 23.0 41.0 37 34.287288817377316 35.0 34.0 40.0 23.0 41.0 38 34.205395293005914 35.0 34.0 40.0 23.0 41.0 39 34.02928399034594 35.0 34.0 40.0 22.0 41.0 40 34.005828193438816 35.0 34.0 40.0 22.0 41.0 41 33.937879426375 35.0 33.0 40.0 22.0 41.0 42 33.86381514257621 35.0 33.0 40.0 21.0 41.0 43 33.678988366598986 35.0 33.0 40.0 21.0 41.0 44 33.495299390874614 35.0 33.0 40.0 20.0 41.0 45 33.315335402061066 35.0 33.0 40.0 20.0 41.0 46 33.342548110689705 35.0 33.0 40.0 20.0 41.0 47 33.315838537077475 35.0 33.0 40.0 20.0 41.0 48 33.26329923763552 35.0 33.0 40.0 20.0 41.0 49 33.16005695386227 35.0 33.0 40.0 20.0 41.0 50 33.0486968292278 35.0 33.0 39.0 18.0 41.0 51 32.60423322989695 35.0 32.0 39.0 17.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 2.0 12 3.0 13 9.0 14 15.0 15 39.0 16 83.0 17 175.0 18 422.0 19 764.0 20 1302.0 21 2124.0 22 3341.0 23 5306.0 24 8630.0 25 12976.0 26 16333.0 27 17543.0 28 17913.0 29 18308.0 30 20282.0 31 24533.0 32 30364.0 33 39986.0 34 69787.0 35 103173.0 36 95844.0 37 68824.0 38 85884.0 39 139043.0 40 81.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 24.468324202837476 18.796179238657114 25.13133867116168 31.604157887343725 2 32.650270083898405 20.58613952419262 28.605651968483826 18.15793842342515 3 20.97677150774496 21.35182418368259 39.8273506238108 17.844053684761647 4 22.140239308380902 24.667279623031835 36.33707492114572 16.855406147441546 5 18.01338288063952 31.030405189697223 34.827669871917664 16.128542057745598 6 76.65070426132374 1.9276200692129895 19.94036445363879 1.48131121582449 7 73.04907481898633 7.320359090270595 17.843159790062447 1.787406300680637 8 72.28275166328264 3.911044707504884 20.926841103832256 2.8793625253802246 9 38.46020253099899 23.16783511473777 27.03201420015579 11.339948154107446 10 29.37401831207141 23.687187934975544 36.15574199644996 10.783051756503085 11 27.3330013153022 21.70261400349896 37.60908707811363 13.355297603085214 12 17.452272408024623 31.889821093360915 35.92396787087053 14.733938627743937 13 12.770179672834539 34.377657740489596 37.11310321929791 15.739059367377953 14 12.311994789870896 25.060082493710812 47.18257160735037 15.445351109067923 15 13.781046878392011 22.750258590966553 46.32430499687137 17.144389533770067 16 14.438314880792758 24.872236907635138 36.55441903229514 24.13502917927697 17 15.694875429388706 25.436922959046854 41.69367505650691 17.17452655505753 18 19.822114954858318 27.523911683203718 36.34665236435148 16.307320997586483 19 19.816240789692117 26.511639785976072 36.86587748534651 16.806241938985302 20 15.092262702882172 29.766693483507645 38.264184193387734 16.87685962022245 21 16.732048678951333 26.808157427626455 35.3260800163455 21.13371387707671 22 13.24688094599599 30.1559207753898 36.25802908988749 20.33916918872671 23 12.6787470150302 26.84761649363419 45.765876208354086 14.707760282981521 24 14.218416784788465 27.586995109119 41.79953772874127 16.39505037735126 25 13.35810698642557 31.920596610862095 36.43834042064131 18.282955982071027 26 12.995313437791314 33.52999016715831 36.052177910584994 17.42251848446539 27 13.412762262319786 31.374810047376418 40.47491348376304 14.737514206540755 28 13.177157159458044 27.374120471465602 39.53594095187016 19.912781417206197 29 13.436642020712815 32.83492318890549 37.770754319426885 15.957680470954807 30 19.303656029319747 32.1863387350113 34.003626658493914 14.506378577175038 31 19.550626364785657 29.206221507106463 35.866120113907726 15.377032014200157 32 18.49161654471389 31.76084485818999 33.659349500057466 16.088189097038654 33 15.02049572846033 31.79864383404206 34.48735139000625 18.69350904749135 34 16.758482422199236 29.628012105888214 35.51686268500428 18.096642786908273 35 21.346971612458336 30.024645953849493 32.76762568797967 15.860756745712498 36 17.133790496622357 32.880894916293144 34.71899781634295 15.26631677074155 37 17.11667879809473 31.88547931910764 33.95433475079493 17.04350713200271 38 17.11272012156968 32.44135412277005 33.00604017418177 17.4398855814785 39 18.980449245935972 29.450254759989274 33.17038909959264 18.398906894482113 40 14.32900432900433 28.381539797469003 36.02472257339514 21.26473330013153 41 16.01412353624743 29.89273263609547 33.05405508945332 21.03908873820378 42 17.080412213155576 28.739097677150777 33.95625023943608 20.22423987025757 43 16.718895656948753 30.35653628573983 34.15724884751433 18.767319209797087 44 14.805833301408523 35.945293644408686 31.16857577034568 18.08029728383711 45 17.301715000830047 33.2134237443972 32.354390938461734 17.130470316311026 46 16.820161156444343 31.953543015489917 32.553729456384325 18.672566371681416 47 15.31394858828487 30.307116678798096 36.000204318788384 18.378730414128643 48 17.7076708935116 27.51816521728026 35.760257441673375 19.01390644753477 49 17.374503569193838 30.71766974421842 33.136421101022876 18.771405585564878 50 15.369625458121034 31.045856798069188 33.357723888697336 20.22679385511244 51 14.780293452859825 28.771150187079392 35.980921733134124 20.46763462692666 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 811.0 1 5338.0 2 9865.0 3 38467.5 4 67070.0 5 38650.5 6 10231.0 7 10343.0 8 10455.0 9 12884.0 10 15313.0 11 17284.5 12 19256.0 13 18545.5 14 17835.0 15 15796.5 16 13758.0 17 11662.5 18 9567.0 19 8240.5 20 6914.0 21 6478.0 22 6042.0 23 5625.5 24 5209.0 25 5566.0 26 6691.5 27 7460.0 28 8373.0 29 9286.0 30 10168.5 31 11051.0 32 12623.5 33 14196.0 34 16667.5 35 19139.0 36 22146.5 37 25154.0 38 26283.0 39 27412.0 40 30999.0 41 34586.0 42 41958.5 43 49331.0 44 54123.5 45 58916.0 46 60889.5 47 62863.0 48 61656.0 49 60449.0 50 56260.0 51 52071.0 52 45535.0 53 38999.0 54 34111.5 55 29224.0 56 26284.0 57 23344.0 58 21094.0 59 18844.0 60 16077.5 61 13311.0 62 11194.0 63 9077.0 64 7479.5 65 5882.0 66 4910.5 67 3939.0 68 3355.5 69 2772.0 70 2505.0 71 2238.0 72 2257.0 73 2276.0 74 1850.0 75 1111.0 76 798.0 77 571.5 78 345.0 79 304.5 80 264.0 81 168.5 82 73.0 83 77.5 84 82.0 85 51.5 86 21.0 87 13.0 88 5.0 89 5.0 90 5.0 91 3.0 92 1.0 93 2.0 94 3.0 95 1.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 783090.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 33.40271988652725 #Duplication Level Percentage of deduplicated Percentage of total 1 78.31069846810931 26.157903250485536 2 9.462602601590357 6.321533281968934 3 3.5574788605638523 3.564884096449695 4 1.8526410647637728 2.4753300214632756 5 1.1374064717394954 1.8996234886318817 6 0.7576639102111119 1.5184821216547622 7 0.5793915981732767 1.3547278680872519 8 0.4388307420517215 1.1726512283480437 9 0.3099929751925129 0.9319147665432028 >10 2.7396435635593694 20.495908936602653 >50 0.6663309718483372 15.368914479618665 >100 0.1809689833088479 9.003256632641289 >500 0.004365479860520454 0.9951477176736039 >1k 0.0011905854165055782 0.5763823466690862 >5k 3.9686180550185937E-4 0.7562698453880259 >10k+ 3.9686180550185937E-4 7.407069917774116 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 55876 7.135322887535277 No Hit CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5705 0.7285241798516134 No Hit CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2253 0.28770639390108416 No Hit TTTTTGGGATTATTTTACTTCTACTCACAATTCTAGAATTTGCAGTAGCAT 1088 0.1389367761049177 No Hit CTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1007 0.12859313744269496 No Hit CCTGTCTCTTATACACATCTGACGCAAGGAGCTTCGTATGCCGTCTTCTGC 954 0.12182507757728997 No Hit CTGTCTCTTATACACATCTGACGCAAGGAGCTTCGTATGCCGTCTTCTGCT 886 0.1131415290707326 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT 857 0.10943825103117137 No Hit GCGAAGGGTCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCA 786 0.10037160479638356 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.11799410029498525 0.0 2 0.0 0.0 0.0 0.38871649491118515 0.0 3 0.0 0.0 0.0 0.6517769349627757 0.0 4 0.0 0.0 0.0 0.8198291384132093 0.0 5 0.0 0.0 0.0 1.787661699166124 0.0 6 0.0 0.0 0.0 2.058511793025067 0.0 7 0.0 0.0 0.0 2.857398255628344 0.0 8 0.0 0.0 0.0 3.7952214943365385 0.0 9 0.0 0.0 0.0 4.485308202122361 0.0 10 0.0 0.0 0.0 4.954858317690176 0.0 11 0.0 0.0 0.0 5.4799576038514095 0.0 12 0.0 0.0 0.0 5.906217676129181 0.0 13 0.0 0.0 0.0 6.087805999310424 0.0 14 0.0 0.0 0.0 6.230573752697646 0.0 15 0.0 0.0 0.0 6.721960438774598 0.0 16 0.0 0.0 0.0 7.2860079939725955 0.0 17 0.0 0.0 0.0 8.012616685183056 0.0 18 0.0 0.0 0.0 8.328289213244965 0.0 19 0.0 0.0 0.0 8.725944655148195 0.0 20 0.0 0.0 0.0 9.137263916024978 0.0 21 0.0 0.0 0.0 9.558543717835754 0.0 22 1.2769924274349054E-4 0.0 0.0 9.987868571939368 0.0 23 2.5539848548698107E-4 0.0 0.0 10.32486687353944 0.0 24 5.107969709739621E-4 0.0 0.0 10.600058741651662 0.0 25 5.107969709739621E-4 0.0 0.0 10.88355106054221 0.0 26 5.107969709739621E-4 0.0 0.0 11.190029243126588 0.0 27 5.107969709739621E-4 0.0 0.0 11.489228568874587 0.0 28 5.107969709739621E-4 0.0 0.0 11.798388435556577 0.0 29 5.107969709739621E-4 0.0 0.0 12.168843938755444 0.0 30 5.107969709739621E-4 0.0 0.0 12.506097638841002 0.0 31 5.107969709739621E-4 0.0 0.0 12.798018107752622 0.0 32 5.107969709739621E-4 0.0 0.0 13.096068140315928 0.0 33 5.107969709739621E-4 0.0 0.0 13.389137902412239 0.0 34 5.107969709739621E-4 0.0 0.0 13.76495677380633 0.0 35 5.107969709739621E-4 0.0 0.0 14.08318328672311 0.0 36 5.107969709739621E-4 0.0 0.0 14.385064296568721 0.0 37 5.107969709739621E-4 0.0 0.0 14.73074614667535 0.0 38 5.107969709739621E-4 0.0 0.0 15.065828959634269 0.0 39 5.107969709739621E-4 0.0 0.0 15.430027199938705 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACATCGA 45 3.8380676E-10 45.000004 12 TTACCGG 45 3.8380676E-10 45.000004 1 CGGGTTC 75 0.0 45.0 5 GTGCAAC 20 7.0319074E-4 45.0 33 AACCGTA 20 7.0319074E-4 45.0 37 ATGGGCG 150 0.0 45.0 4 TGTCAAC 20 7.0319074E-4 45.0 26 CGGCGTA 20 7.0319074E-4 45.0 14 GCGACAA 20 7.0319074E-4 45.0 8 GATCGTC 20 7.0319074E-4 45.0 8 GGTCGTA 25 3.8896633E-5 45.0 7 GGTAACC 20 7.0319074E-4 45.0 7 TTTACGG 20 7.0319074E-4 45.0 1 CGACGGT 150 0.0 45.0 27 TTAGCCG 20 7.0319074E-4 45.0 11 GCAACTC 25 3.8896633E-5 45.0 8 GCAACCG 20 7.0319074E-4 45.0 35 TCGGGTA 20 7.0319074E-4 45.0 4 ACATTGC 20 7.0319074E-4 45.0 36 TAAACCG 20 7.0319074E-4 45.0 19 >>END_MODULE