SRR1043416_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043416_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	297787
Sequences flagged as poor quality	0
Sequence length	51
%GC	39

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	15216	5.109692498329343	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1684	0.565504874289341	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	678	0.22767951589558982	No Hit
TAGAAGGGGAATTAAAATCCAACTTATATGTGAAAATTCATTGTTAGGACC	457	0.15346539640749932	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	406	0.1363390611410169	No Hit
GTGTTGGGTTAACAGAGAAGTTATAGGTGGATTATTTATAGTGTGATTATT	377	0.12660055677380141	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	333	0.11182489497526757	No Hit
GAGAAGGGTCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCA	322	0.1081309795256341	No Hit
TAAGCGGGAATCAACAACCGTCTCCATTCTTTCCAACACTGACTAGTTAAA	307	0.10309382209431574	No Hit
CTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	300	0.10074314862636717	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCTTCGC	30	2.1600663E-6	45.000004	42
CTTCGCG	30	2.1600663E-6	45.000004	43
CGGGTCG	20	7.024858E-4	45.000004	5
CTGTCAG	20	7.024858E-4	45.000004	16
GAAGCTA	30	2.1600663E-6	45.000004	43
AGTCCGA	20	7.024858E-4	45.000004	23
GCCTTCG	30	2.1600663E-6	45.000004	41
CGAACAG	20	7.024858E-4	45.000004	45
ACGCCCA	20	7.024858E-4	45.000004	26
GATCGTT	20	7.024858E-4	45.000004	35
GATGTAA	20	7.024858E-4	45.000004	40
CGTATAA	30	2.1600663E-6	45.000004	27
GGTAAAC	20	7.024858E-4	45.000004	7
TTTACGG	40	6.7866495E-9	45.000004	1
TGCCACG	20	7.024858E-4	45.000004	22
CCGATGG	40	6.7866495E-9	45.000004	1
TCCGAGA	20	7.024858E-4	45.000004	25
ACACCCG	30	2.1600663E-6	45.000004	28
CACATCG	35	1.2078817E-7	45.000004	16
CGTGACA	20	7.024858E-4	45.000004	20