SRR1043415_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043415_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	848265
Sequences flagged as poor quality	0
Sequence length	51
%GC	39

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	47129	5.55592886656882	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5005	0.5900278804383065	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2008	0.23671847830571816	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	997	0.11753402533406423	No Hit
CTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	920	0.10845667332732105	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGTTAC	20	7.032239E-4	45.000004	41
CGGTTGA	20	7.032239E-4	45.000004	25
GAATCGT	20	7.032239E-4	45.000004	20
CGATTCG	20	7.032239E-4	45.000004	9
CACTGCG	20	7.032239E-4	45.000004	15
TATTGCG	20	7.032239E-4	45.000004	1
TATTGCA	20	7.032239E-4	45.000004	33
AGCGGTA	20	7.032239E-4	45.000004	26
CCCGTAG	20	7.032239E-4	45.000004	23
ACCTAGT	20	7.032239E-4	45.000004	43
CGTAGTA	20	7.032239E-4	45.000004	28
AACGCCA	65	0.0	45.000004	14
ACGTGCC	20	7.032239E-4	45.000004	9
AGCGATC	20	7.032239E-4	45.000004	7
TCGAGCG	20	7.032239E-4	45.000004	1
CACGTTA	20	7.032239E-4	45.000004	40
CAATACG	20	7.032239E-4	45.000004	1
ATACCGG	20	7.032239E-4	45.000004	1
ACCCACG	20	7.032239E-4	45.000004	22
CGGACCC	20	7.032239E-4	45.000004	36