SRR1043414_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043414_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1493742
Sequences flagged as poor quality	0
Sequence length	51
%GC	39

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	57058	3.819802884299966	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6195	0.41473025462228413	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2409	0.1612728302477938	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTCGTTA	20	7.033966E-4	45.0	30
GTCGAAC	25	3.8913695E-5	45.0	33
ACGTTAC	20	7.033966E-4	45.0	34
ATCGTAG	20	7.033966E-4	45.0	10
ATATCCG	20	7.033966E-4	45.0	9
TCGGACC	40	6.8175723E-9	45.0	12
CGTAGCG	35	1.2122473E-7	45.0	27
AGCGCGT	35	1.2122473E-7	45.0	44
TCGTCGA	20	7.033966E-4	45.0	32
CGTCGAC	20	7.033966E-4	45.0	33
CGCCGCA	20	7.033966E-4	45.0	17
CCAGTCG	20	7.033966E-4	45.0	27
CGTCCAG	20	7.033966E-4	45.0	15
TACGTCG	20	7.033966E-4	45.0	1
CGTTTTT	17345	0.0	44.066013	1
CCAGCGG	150	0.0	43.5	1
TTACCGG	120	0.0	43.125004	1
TATCCGG	70	0.0	41.785713	1
GAACGCA	200	0.0	41.625	8
ACGTAGG	120	0.0	41.250004	1