SRR1043413_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043413_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	3271626
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	120179	3.673372200856699	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	24382	0.7452563343120515	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	12799	0.39121219846033745	No Hit
GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	11277	0.3446909885176362	No Hit
GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	9299	0.2842317550967012	No Hit
TGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	6131	0.18739917093212977	No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA	5425	0.16581968721363627	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5312	0.16236574718503888	No Hit
AGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	5052	0.15441862853516874	No Hit
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG	3442	0.10520762458789605	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGTATC	20	7.035198E-4	45.000004	22
TCGCTTA	25	3.8923907E-5	45.0	43
CGTTTTT	32190	0.0	43.671947	1
ACTACGG	155	0.0	43.548386	1
GCGATAG	315	0.0	41.42857	8
CACGACG	750	0.0	41.4	25
CGTTTTA	1755	0.0	40.897438	1
CGACGGT	775	0.0	40.35484	27
AATGCGG	410	0.0	40.060974	1
ACGTAGG	265	0.0	39.905655	1
CACTTAC	9020	0.0	39.86142	36
ACTTACT	8980	0.0	39.76336	37
CGCACTT	9080	0.0	39.59802	34
CTTACTG	9015	0.0	39.409317	38
GCACTTA	9125	0.0	39.353428	35
ATAGCGG	515	0.0	39.32039	1
ACCCGCA	9165	0.0	39.255318	31
CGGTCTA	800	0.0	39.09375	30
TAACGCC	190	0.0	39.078945	11
TTCCGTA	340	0.0	39.044117	45