SRR1043412_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043412_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	5390474
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	261688	4.854638015135589	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	33124	0.6144914157827308	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	26661	0.4945947239519196	No Hit
GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	13260	0.24598949925368346	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	11417	0.2117995560316217	No Hit
GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	10329	0.19161580224670408	No Hit
AGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	6150	0.11409015236878983	No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA	6143	0.11396029365877657	No Hit
TGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	5677	0.1053154138207512	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	69405	44.13767	1
CGTTTTA	3445	41.865025	1
CGGTCTA	1085	41.474655	30
CGCACTT	11060	41.053345	34
CCGCACT	11035	41.044403	33
CACTTAC	11125	41.035954	36
CTTACTG	11020	40.957348	38
ACCCGCA	11100	40.88513	31
CCCGCAC	11190	40.817696	32
ACTTACT	11160	40.544353	37
TCACGAC	1140	40.460526	24
GCACTTA	11285	40.314575	35
CAACGCA	12020	39.309486	16
CTTATGA	11845	39.30139	25
TATGACC	11800	39.27966	27
ATAGCGG	815	39.202454	1
ATCAACG	12130	39.101402	14
AACGCAA	12100	39.049587	17
GCGCGAC	4325	39.017338	8
TTATGAC	11925	39.0	26