SRR1043411_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043411_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	802702
Sequences flagged as poor quality	0
Sequence length	51
%GC	38

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	46819	5.832675139715611	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4970	0.6191587911827802	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1961	0.2442998771648756	No Hit
GCGAAGGGTCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCA	1247	0.15535030434706776	No Hit
GTGTTGGGTTAACAGAGAAGTTATAGGTGGATTATTTATAGTGTGATTATT	989	0.12320886206836411	No Hit
CTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	926	0.11536037034914576	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	816	0.10165665464892326	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	813	0.1012829169480081	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATCTCGG	30	2.164681E-6	45.000004	1
CTATCGG	30	2.164681E-6	45.000004	1
CACATCG	30	2.164681E-6	45.000004	16
GAATACG	30	2.164681E-6	45.000004	38
TTATAGT	115	0.0	45.000004	36
CCGTATT	30	2.164681E-6	45.000004	17
GTTGTTA	30	2.164681E-6	45.000004	29
TTAACGT	30	2.164681E-6	45.000004	30
ACGTCTT	30	2.164681E-6	45.000004	33
ACATCGC	30	2.164681E-6	45.000004	17
CGCGTCA	30	2.164681E-6	45.000004	21
GTTATCG	30	2.164681E-6	45.000004	31
TCTGCGT	20	7.032014E-4	45.0	44
CTTGTAC	20	7.032014E-4	45.0	43
CAGCGTT	25	3.8897513E-5	45.0	13
AACGTAG	25	3.8897513E-5	45.0	32
GTCGATT	20	7.032014E-4	45.0	19
GCGGTCA	20	7.032014E-4	45.0	26
CGTTGCG	20	7.032014E-4	45.0	16
TAACGTA	25	3.8897513E-5	45.0	31