SRR1043410_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043410_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	614093
Sequences flagged as poor quality	0
Sequence length	51
%GC	38

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	42115	6.858081756346351	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4391	0.7150382759614586	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1775	0.2890441675772236	No Hit
GTGTTGGGTTAACAGAGAAGTTATAGGTGGATTATTTATAGTGTGATTATT	1037	0.16886693057891883	No Hit
GCGAAGGGTCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCA	980	0.15958494885953756	No Hit
CTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	815	0.13271605440869705	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	728	0.11854881915279933	No Hit
CCTGTCTCTTATACACATCTGACGCGAACGGAATCGTATGCCGTCTTCTGC	683	0.11122093884802466	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCACGAC	215	0.0	45.0	24
CAGGTTT	25	3.8886763E-5	45.0	45
CAGGTTC	25	3.8886763E-5	45.0	31
CAGGTAT	45	3.8380676E-10	45.0	40
TGTCACC	45	3.8380676E-10	45.0	30
CGGGTAC	50	2.1827873E-11	45.0	5
ATCTCGG	20	7.0307165E-4	45.0	1
ACCGGGT	40	6.8066583E-9	45.0	3
ACCGGCA	20	7.0307165E-4	45.0	3
AGTTTGG	80	0.0	45.0	1
TCCGCAA	55	1.8189894E-12	45.0	31
GGTAACC	20	7.0307165E-4	45.0	18
GCAACTA	20	7.0307165E-4	45.0	8
ACACCCG	35	1.210683E-7	45.0	28
TATGGGT	70	0.0	45.0	3
CACATCG	50	2.1827873E-11	45.0	16
ACCGACT	35	1.210683E-7	45.0	33
TCGGGCA	50	2.1827873E-11	45.0	4
CCTACGG	25	3.8886763E-5	45.0	1
CACGACC	20	7.0307165E-4	45.0	26