FastQCFastQC Report
Thu 26 May 2016
SRR1043409_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1043409_1.fastq.gz
File typeConventional base calls
EncodingIllumina 1.5
Total Sequences1089531
Sequences flagged as poor quality0
Sequence length51
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT529264.857686472436305No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT55820.5123305348815224No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT21540.19769974420186298No Hit

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TTACCGG650.045.0000041
AGCGTAA207.0331263E-445.021
AACCGCG207.0331263E-445.044
ACGCCCC253.890671E-545.016
GATCGTC207.0331263E-445.09
TCCGATT207.0331263E-445.023
GGCACTA207.0331263E-445.07
CGTGACA207.0331263E-445.032
CGACCGA207.0331263E-445.033
CGACATA207.0331263E-445.011
ATCACGT453.8562575E-1045.015
ATCGTGT207.0331263E-445.034
TAACCCG253.890671E-545.036
TCTACGG1000.045.01
CACTACG207.0331263E-445.018
CTTGCGG2750.045.01
TTGACGT207.0331263E-445.019
GATATCG406.8139343E-945.08
CAAATCG207.0331263E-445.010
TTAAACG207.0331263E-445.029