SRR1043409_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043409_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1089531
Sequences flagged as poor quality	0
Sequence length	51
%GC	39

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	52926	4.857686472436305	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5582	0.5123305348815224	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2154	0.19769974420186298	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTACCGG	65	0.0	45.000004	1
AGCGTAA	20	7.0331263E-4	45.0	21
AACCGCG	20	7.0331263E-4	45.0	44
ACGCCCC	25	3.890671E-5	45.0	16
GATCGTC	20	7.0331263E-4	45.0	9
TCCGATT	20	7.0331263E-4	45.0	23
GGCACTA	20	7.0331263E-4	45.0	7
CGTGACA	20	7.0331263E-4	45.0	32
CGACCGA	20	7.0331263E-4	45.0	33
CGACATA	20	7.0331263E-4	45.0	11
ATCACGT	45	3.8562575E-10	45.0	15
ATCGTGT	20	7.0331263E-4	45.0	34
TAACCCG	25	3.890671E-5	45.0	36
TCTACGG	100	0.0	45.0	1
CACTACG	20	7.0331263E-4	45.0	18
CTTGCGG	275	0.0	45.0	1
TTGACGT	20	7.0331263E-4	45.0	19
GATATCG	40	6.8139343E-9	45.0	8
CAAATCG	20	7.0331263E-4	45.0	10
TTAAACG	20	7.0331263E-4	45.0	29