##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1043409_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1089531 Sequences flagged as poor quality 0 Sequence length 51 %GC 39 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.56498805449317 31.0 31.0 33.0 30.0 34.0 2 30.604792337253368 31.0 31.0 34.0 26.0 34.0 3 31.517084874133918 31.0 31.0 34.0 28.0 34.0 4 35.12599182584066 37.0 35.0 37.0 32.0 37.0 5 35.43848224603063 37.0 35.0 37.0 33.0 37.0 6 35.86535215611121 37.0 35.0 37.0 35.0 37.0 7 33.85798751940055 37.0 35.0 37.0 32.0 37.0 8 34.849397584832374 37.0 35.0 37.0 32.0 37.0 9 36.82117902106503 39.0 37.0 39.0 32.0 39.0 10 36.70029948665986 39.0 35.0 39.0 32.0 39.0 11 36.544981280936476 39.0 35.0 39.0 32.0 39.0 12 36.475387116107754 39.0 35.0 39.0 32.0 39.0 13 36.528811938347786 39.0 35.0 39.0 32.0 39.0 14 37.87142082235384 40.0 36.0 41.0 33.0 41.0 15 38.01170687203944 40.0 36.0 41.0 33.0 41.0 16 37.97032851749973 40.0 36.0 41.0 33.0 41.0 17 37.94397956551948 40.0 36.0 41.0 33.0 41.0 18 37.68682763500993 39.0 36.0 41.0 33.0 41.0 19 37.430092397554546 38.0 35.0 41.0 33.0 41.0 20 37.13268277818621 38.0 35.0 41.0 33.0 41.0 21 37.03589159005113 38.0 35.0 41.0 33.0 41.0 22 36.95101378483035 38.0 35.0 40.0 33.0 41.0 23 36.87343269718806 38.0 35.0 40.0 33.0 41.0 24 36.72679712647001 38.0 35.0 40.0 32.0 41.0 25 36.63542386586522 38.0 35.0 40.0 32.0 41.0 26 36.38257103285726 38.0 35.0 40.0 32.0 41.0 27 36.308359284866604 37.0 35.0 40.0 31.0 41.0 28 36.24798560114398 37.0 35.0 40.0 31.0 41.0 29 36.18959258616781 37.0 35.0 40.0 31.0 41.0 30 35.996053347724846 37.0 35.0 40.0 31.0 41.0 31 35.57874259658514 37.0 35.0 40.0 30.0 41.0 32 35.4178954063721 37.0 35.0 40.0 28.0 41.0 33 35.27333320483768 37.0 35.0 40.0 27.0 41.0 34 35.065625484726915 37.0 35.0 40.0 25.0 41.0 35 34.844704739929384 37.0 35.0 40.0 24.0 41.0 36 34.65609239204759 37.0 34.0 40.0 23.0 41.0 37 34.55834207562704 37.0 34.0 40.0 23.0 41.0 38 34.45554004429429 37.0 34.0 40.0 22.0 41.0 39 34.3379977256269 37.0 34.0 40.0 22.0 41.0 40 34.260788357559356 37.0 34.0 40.0 21.0 41.0 41 34.167271055160434 36.0 34.0 40.0 21.0 41.0 42 34.08722652223755 36.0 34.0 40.0 21.0 41.0 43 33.940839682395456 36.0 33.0 40.0 20.0 41.0 44 33.746972780031044 36.0 33.0 40.0 18.0 41.0 45 33.555452759031176 35.0 33.0 40.0 18.0 41.0 46 33.55625034992121 35.0 33.0 40.0 18.0 41.0 47 33.53298162236779 35.0 33.0 40.0 18.0 41.0 48 33.487514352505805 36.0 33.0 40.0 18.0 41.0 49 33.40064394679913 35.0 33.0 40.0 18.0 41.0 50 33.292231244452886 35.0 33.0 40.0 18.0 41.0 51 32.871574099314294 35.0 32.0 40.0 17.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 2.0 11 0.0 12 4.0 13 4.0 14 24.0 15 28.0 16 92.0 17 237.0 18 526.0 19 991.0 20 1665.0 21 2810.0 22 4389.0 23 7132.0 24 11846.0 25 18233.0 26 23017.0 27 24929.0 28 24701.0 29 24822.0 30 27564.0 31 32374.0 32 39963.0 33 52004.0 34 88398.0 35 124886.0 36 111373.0 37 103721.0 38 139591.0 39 224103.0 40 102.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 26.1995298894662 18.364690862398593 25.947953752577945 29.487825495557264 2 31.736683031506217 20.85245853491089 29.658082239055155 17.752776194527737 3 21.835358516646153 21.55165846589037 37.771389708048694 18.841593309414783 4 22.90976576159834 24.908056769380586 34.27419687920766 17.907980589813416 5 19.982542947378278 31.47556150306875 32.42688826660279 16.115007282950184 6 79.48337403892134 1.841159177664518 17.26054605146618 1.4149207319479666 7 76.2915419570439 6.834500349232835 15.523560137343498 1.3503975563797632 8 75.8104175099194 3.9242573180570353 18.198013640731656 2.0673115312919044 9 37.28044452154184 30.362697344086587 23.39410260010959 8.96275553426199 10 26.92268508192975 23.09369811414269 38.43782324688329 11.545793557044268 11 25.69022818074933 21.690709121631237 38.47710620441273 14.14195649320671 12 17.757548890302342 29.86762194008248 38.06096384591168 14.313865323703501 13 14.266597279012712 31.976602776791115 37.88758649363809 15.869213450558084 14 13.308937515316224 25.667466093208912 45.41642229546475 15.607174096010118 15 15.799917579215277 23.830253567819547 44.5715633607488 15.798265492216377 16 16.221291546546173 23.327927337542484 37.88235488480824 22.568426231103107 17 16.99281617503311 23.48193855888451 41.52915336966089 17.996091896421486 18 19.754738506751988 25.247285299821666 37.60324396460496 17.39473222882139 19 21.02014536529938 25.37330282479342 37.228587346298546 16.377964463608656 20 17.51248931879864 28.053722197899834 38.111719629822375 16.32206885347916 21 18.610117564346492 24.838577332815678 36.382168107194744 20.16913699564308 22 14.794806205605898 27.86033623641732 36.869992684925904 20.474864873050883 23 14.339105541742272 24.159386011045118 45.57162669075042 15.929881756462184 24 14.997829341248666 25.971633666228865 42.11757168910293 16.912965303419544 25 14.93183764390366 30.545436522687286 37.054200385303396 17.468525448105655 26 14.426666152684046 30.29927555985098 37.745874142176774 17.528184145288204 27 14.342134367906926 27.94615297774914 41.03361905260153 16.6780936017424 28 13.712230308270257 25.088409600093986 41.21745962253483 19.981900469100925 29 15.208011520553338 29.491405017388217 38.078953237677496 17.22163022438095 30 19.204777101339936 29.04368944068595 35.5409804769208 16.21055298105332 31 19.712426723057902 27.865476062636123 36.284786756870616 16.137310457435355 32 19.474159064771907 29.283976316415046 34.027118090260856 17.214746528552194 33 15.858383102454177 28.932265350871155 35.4113834301181 19.797968116556575 34 16.281592722006074 27.635927752399887 37.09385047327704 18.988629052317005 35 21.653261816322804 28.218104854290516 32.561533357013246 17.567099972373434 36 17.416209359807112 30.557368262123795 34.43417397026794 17.592248407801154 37 16.961334739442936 30.496057477942344 34.22546031274007 18.317147469874655 38 17.16243044025365 30.560121740455298 33.30699172396196 18.97045609532909 39 19.804576464552177 28.07813637243915 32.67387527293854 19.44341189007013 40 15.882521929160346 27.60444631680971 34.526782624817464 21.986249129212478 41 16.682407384461754 29.003488657046013 32.20963882624726 22.104465132244975 42 17.21346157199749 28.509239296541356 33.242835678837956 21.034463452623193 43 17.687794105904285 29.50966975698718 33.649432645789794 19.153103491318742 44 16.20440354611296 33.430898248879565 31.282359106808343 19.08233909819913 45 18.59212817258068 30.646397394842367 32.26590156682095 18.495572865756 46 17.91523141608637 29.81585654745023 32.28921435002767 19.979697686435724 47 16.636240731103566 28.751912520157756 34.79304397947374 19.81880276926494 48 17.907613459369216 26.774180817250727 34.75807480466366 20.560130918716403 49 18.56743865020821 29.707094153355897 32.56190048745744 19.16356670897845 50 16.609348426065896 29.157316313165943 33.15206267650944 21.08127258425873 51 16.76556243007312 27.868596671411826 34.0871439178876 21.278696980627444 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 990.0 1 5678.5 2 10367.0 3 39209.0 4 68051.0 5 40569.5 6 13088.0 7 12946.5 8 12805.0 9 14543.5 10 16282.0 11 17371.0 12 18460.0 13 18381.5 14 18303.0 15 16526.5 16 14750.0 17 13394.0 18 12038.0 19 11030.0 20 10022.0 21 9847.5 22 9673.0 23 9097.5 24 8522.0 25 9207.0 26 11319.0 27 12746.0 28 13850.5 29 14955.0 30 17475.5 31 19996.0 32 23534.0 33 27072.0 34 31292.0 35 35512.0 36 37851.0 37 40190.0 38 43841.5 39 47493.0 40 53376.5 41 59260.0 42 68134.5 43 77009.0 44 81135.0 45 85261.0 46 84984.5 47 84708.0 48 82200.0 49 79692.0 50 75208.0 51 70724.0 52 63062.5 53 55401.0 54 48052.0 55 40703.0 56 35876.5 57 31050.0 58 27885.0 59 24720.0 60 20770.0 61 16820.0 62 14633.5 63 12447.0 64 10106.5 65 7766.0 66 6797.0 67 5828.0 68 5120.5 69 4413.0 70 4091.5 71 3770.0 72 3739.5 73 3709.0 74 3073.0 75 1843.5 76 1250.0 77 1008.0 78 766.0 79 557.5 80 349.0 81 235.0 82 121.0 83 101.0 84 81.0 85 52.5 86 24.0 87 15.5 88 7.0 89 5.5 90 4.0 91 2.5 92 1.0 93 1.0 94 1.0 95 1.5 96 2.0 97 1.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1089531.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 33.401584600550805 #Duplication Level Percentage of deduplicated Percentage of total 1 78.50372258109412 26.221487312505865 2 9.506768473043433 6.35082262860419 3 3.4321183545177165 3.4391457473258016 4 1.7290358781516766 2.310101526458835 5 1.0559858525212724 1.7635800394987022 6 0.7395264309344629 1.4820812788320514 7 0.5415396293152928 1.2661797220187974 8 0.3734827699283985 0.9979933069289164 9 0.2987030186077443 0.8979438731819827 >10 2.8671169926896365 22.051920175939017 >50 0.7604600901445525 17.69223605598614 >100 0.18612436558151452 8.71263266052029 >500 0.004275444844860692 0.9431902067105372 >1k 5.700593126480921E-4 0.3004651551810291 >5k 2.8502965632404607E-4 0.5314310824526314 >10k+ 2.8502965632404607E-4 5.038789227855243 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 52926 4.857686472436305 No Hit CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5582 0.5123305348815224 No Hit CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2154 0.19769974420186298 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.08196187166771758 0.0 2 0.0 0.0 0.0 0.2841589638110343 0.0 3 0.0 0.0 0.0 0.4662556641343844 0.0 4 0.0 0.0 0.0 0.5854812758884327 0.0 5 0.0 0.0 0.0 1.2654986411584435 0.0 6 0.0 0.0 0.0 1.41905094944522 0.0 7 0.0 0.0 0.0 1.922386788443835 0.0 8 0.0 0.0 0.0 2.543663282641797 0.0 9 0.0 0.0 0.0 2.978896424241256 0.0 10 0.0 0.0 0.0 3.32317299829009 0.0 11 0.0 0.0 0.0 3.746382617841989 0.0 12 0.0 0.0 0.0 4.089007104891921 0.0 13 0.0 0.0 0.0 4.241274456623997 0.0 14 0.0 0.0 0.0 4.369311199038853 0.0 15 0.0 0.0 0.0 4.8013319492515585 0.0 16 0.0 0.0 0.0 5.361664789712271 0.0 17 0.0 0.0 0.0 6.0154323282219595 0.0 18 0.0 0.0 0.0 6.384673772476414 0.0 19 0.0 0.0 0.0 6.7720881737187835 0.0 20 0.0 0.0 0.0 7.191626488828679 0.0 21 0.0 0.0 0.0 7.642829804750852 0.0 22 0.0 0.0 0.0 8.115969164713992 0.0 23 0.0 0.0 0.0 8.504301392066862 0.0 24 6.424782773505297E-4 0.0 0.0 8.828661139517829 0.0 25 6.424782773505297E-4 0.0 0.0 9.139253495311285 0.0 26 6.424782773505297E-4 0.0 0.0 9.45994193832025 0.0 27 6.424782773505297E-4 0.0 0.0 9.78760585976902 0.0 28 9.178261105007567E-4 0.0 0.0 10.126375477154848 0.0 29 9.178261105007567E-4 0.0 0.0 10.55160431414985 0.0 30 9.178261105007567E-4 0.0 0.0 10.95122580266188 0.0 31 9.178261105007567E-4 0.0 0.0 11.30422172476047 0.0 32 9.178261105007567E-4 0.0 0.0 11.64216529864685 0.0 33 9.178261105007567E-4 0.0 0.0 12.014619134288056 0.0 34 9.178261105007567E-4 0.0 0.0 12.438930145172556 0.0 35 9.178261105007567E-4 0.0 0.0 12.835063894464682 0.0 36 9.178261105007567E-4 0.0 0.0 13.207242382272739 0.0 37 9.178261105007567E-4 0.0 0.0 13.58263326146755 0.0 38 9.178261105007567E-4 0.0 0.0 13.970231227932018 0.0 39 0.0010096087215508325 0.0 0.0 14.377103542717004 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TTACCGG 65 0.0 45.000004 1 AGCGTAA 20 7.0331263E-4 45.0 21 AACCGCG 20 7.0331263E-4 45.0 44 ACGCCCC 25 3.890671E-5 45.0 16 GATCGTC 20 7.0331263E-4 45.0 9 TCCGATT 20 7.0331263E-4 45.0 23 GGCACTA 20 7.0331263E-4 45.0 7 CGTGACA 20 7.0331263E-4 45.0 32 CGACCGA 20 7.0331263E-4 45.0 33 CGACATA 20 7.0331263E-4 45.0 11 ATCACGT 45 3.8562575E-10 45.0 15 ATCGTGT 20 7.0331263E-4 45.0 34 TAACCCG 25 3.890671E-5 45.0 36 TCTACGG 100 0.0 45.0 1 CACTACG 20 7.0331263E-4 45.0 18 CTTGCGG 275 0.0 45.0 1 TTGACGT 20 7.0331263E-4 45.0 19 GATATCG 40 6.8139343E-9 45.0 8 CAAATCG 20 7.0331263E-4 45.0 10 TTAAACG 20 7.0331263E-4 45.0 29 >>END_MODULE