FastQCFastQC Report
Thu 26 May 2016
SRR1043408_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1043408_1.fastq.gz
File typeConventional base calls
EncodingIllumina 1.5
Total Sequences358576
Sequences flagged as poor quality0
Sequence length51
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT267927.471777252242203No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT28170.78560751416715No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT11730.32712730355628933No Hit
CTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT5080.14167150060238276No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA4870.13581500156173307No Hit
CCTGTCTCTTATACACATCTGACGCCCTGTAACTCGTATGCCGTCTTCTGC4130.11517781446611039Illumina PCR Primer Index 2 (95% over 24bp)
TGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT4090.11406229083931999No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC3900.10876355361206551No Hit

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCTTAAC253.885418E-545.00000434
GTACCGG302.1613087E-645.0000041
TCGCAGG302.1613087E-645.0000041
CGTATTT253.885418E-545.0000041
TCCGCGG253.885418E-545.0000041
TACCAGG253.885418E-545.0000041
CCGATTC302.1613087E-645.00000411
CGCGGGT253.885418E-545.0000043
CAGTTTC253.885418E-545.0000049
ATTACGG253.885418E-545.0000041
GCGCCTT253.885418E-545.00000431
ATTCGGC253.885418E-545.00000416
TGTATCA253.885418E-545.00000424
GGATAAT302.1613087E-645.0000047
ACTTAGG302.1613087E-645.0000041
GCGTTCG253.885418E-545.00000444
CGCCTTA253.885418E-545.00000432
GGCTTAT253.885418E-545.0000047
GAAAGGT253.885418E-545.0000048
ACGATGG302.1613087E-645.0000041