SRR1043408_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043408_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	358576
Sequences flagged as poor quality	0
Sequence length	51
%GC	38

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	26792	7.471777252242203	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2817	0.78560751416715	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1173	0.32712730355628933	No Hit
CTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	508	0.14167150060238276	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	487	0.13581500156173307	No Hit
CCTGTCTCTTATACACATCTGACGCCCTGTAACTCGTATGCCGTCTTCTGC	413	0.11517781446611039	Illumina PCR Primer Index 2 (95% over 24bp)
TGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	409	0.11406229083931999	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	390	0.10876355361206551	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCTTAAC	25	3.885418E-5	45.000004	34
GTACCGG	30	2.1613087E-6	45.000004	1
TCGCAGG	30	2.1613087E-6	45.000004	1
CGTATTT	25	3.885418E-5	45.000004	1
TCCGCGG	25	3.885418E-5	45.000004	1
TACCAGG	25	3.885418E-5	45.000004	1
CCGATTC	30	2.1613087E-6	45.000004	11
CGCGGGT	25	3.885418E-5	45.000004	3
CAGTTTC	25	3.885418E-5	45.000004	9
ATTACGG	25	3.885418E-5	45.000004	1
GCGCCTT	25	3.885418E-5	45.000004	31
ATTCGGC	25	3.885418E-5	45.000004	16
TGTATCA	25	3.885418E-5	45.000004	24
GGATAAT	30	2.1613087E-6	45.000004	7
ACTTAGG	30	2.1613087E-6	45.000004	1
GCGTTCG	25	3.885418E-5	45.000004	44
CGCCTTA	25	3.885418E-5	45.000004	32
GGCTTAT	25	3.885418E-5	45.000004	7
GAAAGGT	25	3.885418E-5	45.000004	8
ACGATGG	30	2.1613087E-6	45.000004	1