FastQCFastQC Report
Thu 26 May 2016
SRR1043407_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1043407_1.fastq.gz
File typeConventional base calls
EncodingIllumina 1.5
Total Sequences2592779
Sequences flagged as poor quality0
Sequence length51
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1519065.8588101801194785No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT154020.5940344317814977No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC138300.5334045053589218No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT65180.25139049645187656No Hit
GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC54890.21170334995770948No Hit
GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC42050.1621811963148421No Hit

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTTTTT386450.044.365381
ATTACGG1950.042.6923071
CGTTTTA19150.042.6501351
CGACGGT5450.042.1100927
TACGGGA5300.042.02833
CGCACTT42800.041.95093534
CCGCACT43300.041.36258733
ACCCGCA43400.041.31912631
CCCGCAC43900.041.15603332
TCGATGG1750.041.1428571
CACTTAC43700.041.0354736
AGGGTAC7900.041.0126575
ACGGGAT7200.040.93754
TCACGTT4850.040.82473845
CTTGCGG7500.040.81
GCACTTA44400.040.4391935
CTTACTG43700.040.36613538
ACTTACT43950.040.34129737
TTATGAC45150.040.1162826
GCGCGAC19700.040.0888338