SRR1043407_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043407_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2592779
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	151906	5.8588101801194785	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	15402	0.5940344317814977	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	13830	0.5334045053589218	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6518	0.25139049645187656	No Hit
GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	5489	0.21170334995770948	No Hit
GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	4205	0.1621811963148421	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	38645	44.36538	1
ATTACGG	195	42.692307	1
CGTTTTA	1915	42.650135	1
CGACGGT	545	42.11009	27
TACGGGA	530	42.0283	3
CGCACTT	4280	41.950935	34
CCGCACT	4330	41.362587	33
ACCCGCA	4340	41.319126	31
CCCGCAC	4390	41.156033	32
TCGATGG	175	41.142857	1
CACTTAC	4370	41.03547	36
AGGGTAC	790	41.012657	5
ACGGGAT	720	40.9375	4
TCACGTT	485	40.824738	45
CTTGCGG	750	40.8	1
GCACTTA	4440	40.43919	35
CTTACTG	4370	40.366135	38
ACTTACT	4395	40.341297	37
TTATGAC	4515	40.11628	26
GCGCGAC	1970	40.088833	8