SRR1043406_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043406_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	731210
Sequences flagged as poor quality	0
Sequence length	51
%GC	37

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	52299	7.152391241914087	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5194	0.7103294539188468	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2137	0.2922553028541732	No Hit
CTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	976	0.1334773867972265	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGCGAG	20	7.0316E-4	45.000004	2
CTAGATT	20	7.0316E-4	45.000004	32
CGGGTGT	110	0.0	45.000004	5
GTGCAAC	20	7.0316E-4	45.000004	41
GTCGACT	35	1.2111195E-7	45.000004	33
CGGCCTA	20	7.0316E-4	45.000004	19
CGGTTCA	20	7.0316E-4	45.000004	40
GATCCGG	40	6.8084773E-9	45.000004	1
GAATCGG	20	7.0316E-4	45.000004	1
CGCGCGT	30	2.1644137E-6	45.000004	45
TTCGTCG	35	1.2111195E-7	45.000004	30
TTCCGTA	20	7.0316E-4	45.000004	45
TTACTCG	20	7.0316E-4	45.000004	14
CGACATC	55	1.8189894E-12	45.000004	10
TTATCGG	30	2.1644137E-6	45.000004	1
TCGGCTT	20	7.0316E-4	45.000004	14
GCACCGG	30	2.1644137E-6	45.000004	1
GTCAGGT	20	7.0316E-4	45.000004	38
CTCGGTA	20	7.0316E-4	45.000004	20
CTACGTC	30	2.1644137E-6	45.000004	13