##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1043406_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 731210 Sequences flagged as poor quality 0 Sequence length 51 %GC 37 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.48216517826616 31.0 31.0 33.0 30.0 34.0 2 30.506925507036282 31.0 31.0 34.0 26.0 34.0 3 31.402495863021567 31.0 31.0 34.0 28.0 34.0 4 35.02313699210897 37.0 35.0 37.0 32.0 37.0 5 35.34490912323409 37.0 35.0 37.0 33.0 37.0 6 35.80172453877819 37.0 35.0 37.0 35.0 37.0 7 33.73081467704216 37.0 35.0 37.0 32.0 37.0 8 34.75712449227992 37.0 35.0 37.0 31.0 37.0 9 36.74362768561699 39.0 37.0 39.0 32.0 39.0 10 36.66535331847212 39.0 35.0 39.0 32.0 39.0 11 36.31484662408884 38.0 35.0 39.0 32.0 39.0 12 36.18242638913581 39.0 35.0 39.0 32.0 39.0 13 36.25518660849824 39.0 35.0 39.0 32.0 39.0 14 37.63186635850166 40.0 35.0 41.0 32.0 41.0 15 37.81793875904323 40.0 35.0 41.0 33.0 41.0 16 37.79939825768247 40.0 35.0 41.0 33.0 41.0 17 37.74936064878763 40.0 36.0 41.0 33.0 41.0 18 37.44533307804871 39.0 36.0 41.0 33.0 41.0 19 37.12482597338658 38.0 35.0 41.0 33.0 41.0 20 36.76981715239124 38.0 35.0 40.0 32.0 41.0 21 36.66319525170608 38.0 35.0 40.0 32.0 41.0 22 36.55684823785233 37.0 35.0 40.0 32.0 41.0 23 36.44816947251815 37.0 35.0 40.0 32.0 41.0 24 36.2418457077994 37.0 35.0 40.0 32.0 41.0 25 36.09886626276993 36.0 35.0 40.0 31.0 41.0 26 35.79535564338562 35.0 35.0 40.0 31.0 41.0 27 35.666856306669764 36.0 35.0 40.0 31.0 41.0 28 35.56656911147277 35.0 35.0 40.0 30.0 41.0 29 35.496587847540376 35.0 35.0 40.0 30.0 41.0 30 35.293726836339765 35.0 35.0 40.0 30.0 41.0 31 34.77397190957454 35.0 34.0 40.0 27.0 41.0 32 34.60981934054512 35.0 34.0 40.0 25.0 41.0 33 34.44667879268609 35.0 34.0 40.0 24.0 41.0 34 34.27751261607472 35.0 34.0 40.0 23.0 41.0 35 34.03876861640295 35.0 33.0 40.0 22.0 41.0 36 33.86540391953064 35.0 33.0 40.0 21.0 41.0 37 33.78697638161404 35.0 33.0 40.0 21.0 41.0 38 33.69981537451621 35.0 33.0 40.0 21.0 41.0 39 33.5736696708196 35.0 33.0 40.0 20.0 41.0 40 33.516628601906426 35.0 33.0 40.0 20.0 41.0 41 33.455910066875454 35.0 33.0 40.0 20.0 41.0 42 33.34308474993504 35.0 33.0 40.0 18.0 41.0 43 33.18045158025738 35.0 33.0 40.0 18.0 41.0 44 32.9743821884274 35.0 33.0 40.0 18.0 41.0 45 32.7978337276569 35.0 33.0 39.0 18.0 41.0 46 32.80563586384213 35.0 33.0 39.0 18.0 41.0 47 32.79438875288905 35.0 33.0 39.0 18.0 41.0 48 32.737037239643875 35.0 33.0 39.0 18.0 41.0 49 32.62984231616088 35.0 33.0 39.0 17.0 41.0 50 32.521263385347574 35.0 33.0 39.0 15.0 41.0 51 32.12469605174984 35.0 31.0 38.0 15.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 2.0 12 4.0 13 9.0 14 13.0 15 39.0 16 109.0 17 206.0 18 512.0 19 911.0 20 1508.0 21 2428.0 22 3720.0 23 5935.0 24 9161.0 25 13550.0 26 16766.0 27 18363.0 28 18643.0 29 18930.0 30 21005.0 31 23959.0 32 29455.0 33 38682.0 34 64586.0 35 95319.0 36 90896.0 37 64608.0 38 77481.0 39 114370.0 40 40.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 24.56284788227732 17.812940195019213 25.23720955676208 32.387002365941385 2 33.36401307421944 19.59710616649116 28.951600771324244 18.087279987965154 3 20.361182150134706 20.218678628574555 41.17804734617962 18.242091875111115 4 20.941863486549693 24.376718042696353 37.77628861749703 16.90512985325693 5 19.313056440694194 29.955279605038225 34.83787147331136 15.893792480956224 6 76.21558786121633 2.0682156972689105 20.169992204701796 1.546204236812954 7 72.70141272685001 7.296262359650442 18.449966493893683 1.5523584196058589 8 71.8566485688106 3.9691743821884278 21.643850603793712 2.530326445207259 9 41.468388014387116 20.92504205358242 26.851246563914604 10.755323368115862 10 30.96771105427989 24.013894777150202 35.17648828653875 9.841905882031154 11 28.27546122181042 21.59311278565665 38.2005169513546 11.930909041178321 12 19.11420795667455 31.066588257819234 35.76838391159858 14.050819873907633 13 13.062047838514243 33.51458541321918 37.03573528808414 16.387631460182437 14 11.954978733879459 26.20259569754243 46.090726330329176 15.751699238248928 15 13.670354617688488 24.29548282983001 45.61767481298122 16.41648773950028 16 15.9657280398244 24.819545684550263 36.03137265628205 23.18335361934328 17 16.695477359445306 25.49527495521123 41.7335649129525 16.075682772390966 18 20.834780705953147 27.540925315572817 35.88791181739856 15.736382161075477 19 21.821774866317472 27.260157820598735 35.81228374885464 15.105783564229155 20 16.585796146113978 30.896049014646955 36.94697829624868 15.571176542990386 21 17.391857332366897 27.71132779912747 35.45657198342474 19.440242885080895 22 13.620984395727628 31.447874071744096 35.09128704476142 19.839854487766853 23 13.241476456831828 27.728969789800466 44.390804283311226 14.638749470056482 24 13.973003651481791 27.809521204578715 42.763364833631925 15.454110310307573 25 13.790019283106083 32.83147112320674 36.68139111883043 16.697118474856744 26 13.472600210609812 34.49993845817207 36.40623076817877 15.621230563039346 27 13.74967519590815 31.286497722952365 40.81905334992683 14.144773731212648 28 12.872635768110394 27.953665841550308 40.36432762133997 18.80937076899933 29 14.389846965987882 32.90764623022114 37.598774633826125 15.103732169964854 30 19.779680256014004 31.86704229974973 33.6833467813624 14.669930662873867 31 19.553343088852724 29.61351732060557 35.5209857633238 15.3121538272179 32 18.387877627494152 32.66681254359213 33.24585276459567 15.699457064318048 33 15.06065289041452 32.25995268117231 33.61018038593564 19.069214042477537 34 15.994447559524625 30.12116902121142 35.528507542292914 18.355875876971048 35 21.346124916234736 30.644548077843574 33.104033041123614 14.905293964798075 36 15.59141696639816 34.23777027119432 34.104429644014715 16.066383118392803 37 15.679490160145512 33.52785109612834 33.593358952968366 17.199299790757784 38 15.164726959423422 34.64914320099561 33.47752355684413 16.708606282736834 39 18.562793178430272 30.707867780801685 32.462083396014826 18.267255644753217 40 14.029758892794137 30.05005402004896 34.892575320359406 21.0276117667975 41 16.448899768876245 30.248765744450978 32.793315189890734 20.509019296782046 42 15.871774182519385 30.917657034230935 33.79261771584087 19.417951067408815 43 16.146934533171045 31.624430738091657 33.60484676084845 18.62378796788884 44 13.656678655926477 37.86190013812721 31.29538709809767 17.186034107848634 45 17.29434772500376 33.922539352579975 32.25885860423134 16.524254318184926 46 15.694943996936583 33.422819709796094 31.410401936516188 19.47183435675114 47 14.909259993709057 31.56466678519167 35.35126707785725 18.174806143242023 48 16.551195962856088 29.637997292159575 35.5617401293746 18.249066615609742 49 16.92906278634045 33.36004704530846 32.55767836873128 17.153211799619807 50 14.817357530668342 32.33804242283338 33.137812666675785 19.706787379822487 51 14.430191053185816 30.61186252923237 35.54163646558444 19.416309951997373 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 702.0 1 4806.0 2 8910.0 3 36264.5 4 63619.0 5 37216.5 6 10814.0 7 11129.5 8 11445.0 9 13768.5 10 16092.0 11 18260.5 12 20429.0 13 20008.5 14 19588.0 15 17373.0 16 15158.0 17 13022.0 18 10886.0 19 9485.5 20 8085.0 21 7347.0 22 6609.0 23 6027.0 24 5445.0 25 5461.5 26 5901.0 27 6324.0 28 6558.5 29 6793.0 30 7781.5 31 8770.0 32 9672.0 33 10574.0 34 12356.5 35 14139.0 36 16408.0 37 18677.0 38 21174.0 39 23671.0 40 28032.0 41 32393.0 42 39507.0 43 46621.0 44 49152.5 45 51684.0 46 50344.5 47 49005.0 48 49114.5 49 49224.0 50 49737.0 51 50250.0 52 47460.5 53 44671.0 54 39784.0 55 34897.0 56 29797.0 57 24697.0 58 21212.0 59 17727.0 60 14862.0 61 11997.0 62 10202.5 63 8408.0 64 7058.5 65 5709.0 66 4681.0 67 3653.0 68 2948.0 69 2243.0 70 2026.5 71 1810.0 72 1679.0 73 1548.0 74 1206.0 75 716.0 76 568.0 77 514.5 78 461.0 79 382.0 80 303.0 81 225.0 82 147.0 83 99.5 84 52.0 85 44.0 86 36.0 87 23.5 88 11.0 89 8.0 90 5.0 91 7.0 92 9.0 93 8.0 94 7.0 95 4.5 96 2.0 97 1.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 731210.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 35.82257875822716 #Duplication Level Percentage of deduplicated Percentage of total 1 78.91574499364414 28.26965490298988 2 8.964652066353885 6.422739093741319 3 3.3686954395916784 3.6202607309176065 4 1.8384245060931121 2.6342842664230153 5 1.178178941005693 2.1102703952730555 6 0.805789493697803 1.731927456032492 7 0.59862989128206 1.5011126499236391 8 0.44229401527945783 1.2675289757312724 9 0.33273937807608883 1.0727624319384794 >10 2.889341949135251 22.38196641867462 >50 0.5351721879141577 13.08908103984148 >100 0.12678248871047862 6.869673560945897 >500 0.002369766144121096 0.5919741767722049 >1k 3.949610240201826E-4 0.3023539234613293 >5k 3.949610240201826E-4 0.7348742529050746 >10k+ 3.949610240201826E-4 7.3995357244286675 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 52299 7.152391241914087 No Hit CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5194 0.7103294539188468 No Hit CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2137 0.2922553028541732 No Hit CTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 976 0.1334773867972265 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.08287632827778614 0.0 2 0.0 0.0 0.0 0.2892465912665308 0.0 3 0.0 0.0 0.0 0.47838514243514174 0.0 4 0.0 0.0 0.0 0.6029731540870612 0.0 5 0.0 0.0 0.0 1.3111144541239863 0.0 6 0.0 0.0 0.0 1.5608375158983054 0.0 7 0.0 0.0 0.0 2.2098986611233435 0.0 8 0.0 0.0 0.0 2.987377087293664 0.0 9 0.0 0.0 0.0 3.6146934533171047 0.0 10 0.0 0.0 0.0 3.9984409403591306 0.0 11 0.0 0.0 0.0 4.434020322479179 0.0 12 0.0 0.0 0.0 4.783304385880937 0.0 13 0.0 0.0 0.0 4.9341502441159175 0.0 14 0.0 0.0 0.0 5.066396794354563 0.0 15 0.0 0.0 0.0 5.459990973865237 0.0 16 0.0 0.0 0.0 5.929213221919832 0.0 17 0.0 0.0 0.0 6.524801356655407 0.0 18 0.0 0.0 0.0 6.825398996184407 0.0 19 1.3675961762010913E-4 0.0 0.0 7.189589857906757 0.0 20 1.3675961762010913E-4 0.0 0.0 7.577850412330247 0.0 21 1.3675961762010913E-4 0.0 0.0 7.966110966753737 0.0 22 1.3675961762010913E-4 0.0 0.0 8.353277444236266 0.0 23 1.3675961762010913E-4 0.0 0.0 8.675209584114002 0.0 24 0.001094076940960873 0.0 0.0 8.96090042532241 0.0 25 0.0020513942643016372 0.0 0.0 9.242214958766976 0.0 26 0.0020513942643016372 0.0 0.0 9.57440406996622 0.0 27 0.0020513942643016372 0.0 0.0 9.851889334117422 0.0 28 0.0020513942643016372 0.0 0.0 10.151392896705461 0.0 29 0.0020513942643016372 0.0 0.0 10.516267556515912 0.0 30 0.0020513942643016372 0.0 0.0 10.831361715512644 0.0 31 0.0020513942643016372 0.0 0.0 11.145361797568414 0.0 32 0.0020513942643016372 0.0 0.0 11.447463792891234 0.0 33 0.0020513942643016372 0.0 0.0 11.768712134680872 0.0 34 0.0020513942643016372 0.0 0.0 12.163126871897266 0.0 35 0.0020513942643016372 0.0 0.0 12.473707963512535 0.0 36 0.0020513942643016372 0.0 0.0 12.803435401594617 0.0 37 0.0020513942643016372 0.0 0.0 13.139590541704845 0.0 38 0.0020513942643016372 0.0 0.0 13.490652480135665 0.0 39 0.0020513942643016372 0.0 0.0 13.837064591567401 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACGCGAG 20 7.0316E-4 45.000004 2 CTAGATT 20 7.0316E-4 45.000004 32 CGGGTGT 110 0.0 45.000004 5 GTGCAAC 20 7.0316E-4 45.000004 41 GTCGACT 35 1.2111195E-7 45.000004 33 CGGCCTA 20 7.0316E-4 45.000004 19 CGGTTCA 20 7.0316E-4 45.000004 40 GATCCGG 40 6.8084773E-9 45.000004 1 GAATCGG 20 7.0316E-4 45.000004 1 CGCGCGT 30 2.1644137E-6 45.000004 45 TTCGTCG 35 1.2111195E-7 45.000004 30 TTCCGTA 20 7.0316E-4 45.000004 45 TTACTCG 20 7.0316E-4 45.000004 14 CGACATC 55 1.8189894E-12 45.000004 10 TTATCGG 30 2.1644137E-6 45.000004 1 TCGGCTT 20 7.0316E-4 45.000004 14 GCACCGG 30 2.1644137E-6 45.000004 1 GTCAGGT 20 7.0316E-4 45.000004 38 CTCGGTA 20 7.0316E-4 45.000004 20 CTACGTC 30 2.1644137E-6 45.000004 13 >>END_MODULE