SRR1043405_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043405_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2289789
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	79861	3.4877012685448308	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	17480	0.7633891157656885	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	9013	0.3936170537984067	No Hit
GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	7140	0.31181912394548145	No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA	7128	0.3112950581909512	No Hit
GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	6056	0.26447851745291817	No Hit
TGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	3872	0.16909855012841793	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3581	0.15638995558106009	No Hit
TTACTGGGAATTCCTCGTTCATGGGGAATAATTGCAATCCCCGATCCCCAT	2927	0.12782837195916305	No Hit
AGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	2878	0.1256884367948313	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACGTAT	25	3.8920236E-5	45.0	22
TGCGATA	20	7.0347567E-4	45.0	45
ACGTATC	25	3.8920236E-5	45.0	23
CGTTTTT	21070	0.0	43.62245	1
ACGTAGG	120	0.0	43.124996	1
CGACGGT	685	0.0	43.029198	27
TACGCGG	235	0.0	42.12766	1
CACGACG	715	0.0	41.53846	25
GACGGTC	715	0.0	41.223778	28
CGGTCTA	710	0.0	41.197186	30
TAGTCAG	1055	0.0	40.734596	33
CATATGC	2560	0.0	40.60547	32
ACGGGTA	300	0.0	40.500004	4
TAGCATA	2565	0.0	40.438595	29
GCATAGG	490	0.0	40.408165	1
CTTACTG	5800	0.0	40.344826	38
TTACGGG	910	0.0	40.302197	2
GCGCGAC	3110	0.0	40.152733	8
GGTACCT	2650	0.0	40.075474	7
ACTTACT	5880	0.0	40.02551	37