SRR1043404_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043404_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	575049
Sequences flagged as poor quality	0
Sequence length	51
%GC	37

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	40549	7.051399098163809	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4183	0.727416272352443	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1704	0.29632257425019437	No Hit
CTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	775	0.13477112385205436	No Hit
GTGTTGGGTTAACAGAGAAGTTATAGGTGGATTATTTATAGTGTGATTATT	726	0.126250110860118	No Hit
CCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTTCTGC	658	0.11442503160600226	No Hit
CTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTTCTGCT	601	0.10451283281946407	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCACGAG	20	7.030344E-4	45.0	2
AGCGTTA	20	7.030344E-4	45.0	44
CTTCGAC	20	7.030344E-4	45.0	31
CGGAACG	20	7.030344E-4	45.0	29
CTGTCGG	20	7.030344E-4	45.0	1
AGATCTA	20	7.030344E-4	45.0	37
AAATCGT	25	3.888366E-5	45.0	11
ACCGGGT	20	7.030344E-4	45.0	3
CGAACCT	20	7.030344E-4	45.0	21
GTCGATA	20	7.030344E-4	45.0	15
GTATTCC	45	3.8380676E-10	45.0	10
AATCAAT	20	7.030344E-4	45.0	45
TGCTTAG	20	7.030344E-4	45.0	12
CGCGGTA	25	3.888366E-5	45.0	37
TGCCAGG	20	7.030344E-4	45.0	1
CGCGGGT	50	2.1827873E-11	45.0	3
ACGTTGG	50	2.1827873E-11	45.0	1
CGCGGAA	20	7.030344E-4	45.0	27
CTATCGG	25	3.888366E-5	45.0	1
CGTGCCT	20	7.030344E-4	45.0	35