##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1043404_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 575049 Sequences flagged as poor quality 0 Sequence length 51 %GC 37 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.589741048154156 31.0 31.0 34.0 30.0 34.0 2 30.59464671706237 31.0 31.0 34.0 26.0 34.0 3 31.487323688937813 31.0 31.0 34.0 28.0 34.0 4 35.110021928566084 37.0 35.0 37.0 32.0 37.0 5 35.41965119494165 37.0 35.0 37.0 33.0 37.0 6 35.84171609723693 37.0 35.0 37.0 35.0 37.0 7 33.72148982086744 37.0 35.0 37.0 32.0 37.0 8 34.796476474178725 37.0 35.0 37.0 31.0 37.0 9 36.84461845860092 39.0 37.0 39.0 32.0 39.0 10 36.78493137106577 39.0 35.0 39.0 32.0 39.0 11 36.314432335331425 38.0 35.0 39.0 32.0 39.0 12 36.06792464642144 38.0 35.0 39.0 32.0 39.0 13 36.14105232771468 39.0 35.0 39.0 32.0 39.0 14 37.519606155301545 40.0 35.0 41.0 33.0 41.0 15 37.719025683028754 40.0 35.0 41.0 33.0 41.0 16 37.685642440905035 40.0 35.0 41.0 33.0 41.0 17 37.68802832454278 39.0 36.0 41.0 33.0 41.0 18 37.38798085032754 39.0 36.0 40.0 33.0 41.0 19 37.06689516893343 37.0 35.0 40.0 33.0 41.0 20 36.72261668136107 37.0 35.0 40.0 33.0 41.0 21 36.63570234884332 37.0 35.0 40.0 32.0 41.0 22 36.550638293432385 37.0 35.0 40.0 32.0 41.0 23 36.46153632125262 36.0 35.0 40.0 32.0 41.0 24 36.31174212980111 36.0 35.0 40.0 32.0 41.0 25 36.21027251590734 35.0 35.0 40.0 32.0 41.0 26 35.94187277953705 35.0 35.0 40.0 31.0 41.0 27 35.88489676531913 36.0 35.0 40.0 31.0 41.0 28 35.81223339228483 36.0 35.0 40.0 31.0 41.0 29 35.75555474403051 36.0 35.0 40.0 31.0 41.0 30 35.58474843013378 35.0 35.0 40.0 31.0 41.0 31 35.12087143878174 35.0 34.0 40.0 30.0 41.0 32 34.98066599541952 35.0 34.0 40.0 29.0 41.0 33 34.84726866753964 35.0 34.0 40.0 27.0 41.0 34 34.65647796970345 35.0 34.0 40.0 26.0 41.0 35 34.41731400280672 35.0 34.0 40.0 24.0 41.0 36 34.234783470625985 35.0 34.0 40.0 23.0 41.0 37 34.154273809710126 35.0 34.0 40.0 23.0 41.0 38 34.07755860804905 35.0 34.0 40.0 23.0 41.0 39 33.86104836283517 35.0 33.0 40.0 22.0 41.0 40 33.852763851428314 35.0 34.0 40.0 22.0 41.0 41 33.8044966602846 35.0 33.0 40.0 22.0 41.0 42 33.70738493589242 35.0 33.0 40.0 21.0 41.0 43 33.531799898791235 35.0 33.0 40.0 21.0 41.0 44 33.332667303134166 35.0 33.0 40.0 20.0 41.0 45 33.168665626755285 35.0 33.0 40.0 20.0 41.0 46 33.182608786381685 35.0 33.0 39.0 20.0 41.0 47 33.18643976426357 35.0 33.0 39.0 20.0 41.0 48 33.128804675775456 35.0 33.0 39.0 20.0 41.0 49 33.00227458877417 35.0 33.0 39.0 18.0 41.0 50 32.87876511392942 35.0 33.0 39.0 18.0 41.0 51 32.4280765639102 35.0 32.0 38.0 17.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 0.0 13 9.0 14 7.0 15 32.0 16 69.0 17 111.0 18 276.0 19 597.0 20 988.0 21 1559.0 22 2534.0 23 3826.0 24 6366.0 25 9562.0 26 11662.0 27 12838.0 28 13088.0 29 13298.0 30 15111.0 31 18114.0 32 22843.0 33 30655.0 34 57884.0 35 86785.0 36 65269.0 37 47807.0 38 58425.0 39 95279.0 40 54.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 25.15403035219607 17.866999160071575 24.406441885821902 32.57252860191044 2 32.31881109261993 20.475472524950046 28.78137341339608 18.424342969033944 3 21.640242831480446 21.305836546103027 38.886947025383925 18.1669735970326 4 23.07959843422039 24.856490490375602 35.34046663849516 16.723444436908856 5 18.727273675808494 30.781202993136237 33.79503311891682 16.696490212138443 6 77.06369370262361 2.2660677611820907 19.269662237478894 1.4005762987154138 7 73.1565483984843 7.6737808430238115 17.33869635457152 1.8309744039203615 8 73.13741959380853 3.3932760512582405 20.91560893071721 2.5536954242160235 9 42.21448954784723 23.115769264880036 25.892228314456684 8.777512872816056 10 33.724778236289424 20.58398501692899 35.51210418590416 10.179132560877422 11 31.62269650064603 20.00351274413137 35.71486951546738 12.658921239755221 12 16.587629923710846 36.24925875881881 34.65287305951319 12.510238257957148 13 11.70022032905022 38.61583969366089 35.93259009232257 13.751349884966324 14 9.718476164639883 24.61703263547976 51.4931771031686 14.17131409671176 15 10.69769706581526 21.681630608869852 50.717243226229414 16.903429099085468 16 12.802387274823538 21.64563367643453 37.38394467254095 28.168034376200985 17 15.042544200581167 23.728064912729177 43.15075758761427 18.078633299075385 18 19.40425946310662 25.389140751483787 37.1596159631614 18.04698382224819 19 21.207410151134948 25.15246526817715 36.419505120433215 17.220619460254692 20 14.67370606678735 30.277245939041713 38.12283822769886 16.926209766472073 21 16.910906722731454 26.07256077308195 34.523144984166564 22.493387520020033 22 12.467807091221792 30.085262299386663 35.082053877147864 22.364876732243687 23 11.369987601056605 25.061168700406398 48.50769238795303 15.061151310583968 24 12.430766769440517 26.10316686056319 44.885740171707106 16.58032619828919 25 11.894290747397179 32.63721874135943 37.59923067425559 17.869259836987805 26 11.298515430858934 35.45697844879306 36.60974977784502 16.63475634250299 27 11.894116849172853 30.37167267485032 43.05389627666512 14.680314199311711 28 11.242346304401886 25.50704374757629 41.86269344003728 21.387916507984535 29 13.073842402995222 31.28915970639024 39.28447836619141 16.352519524423137 30 20.480863369904128 29.624258106700474 34.6626113600754 15.232267163319996 31 20.452691857563444 27.590518373216895 36.66052805934798 15.29626170987168 32 20.352700378576436 29.661820123154726 33.73955958535708 16.24591991291177 33 14.87142834784514 29.99448742628889 35.51958180955015 19.614502416315826 34 14.419814659272514 28.467834914937683 37.49541343433342 19.61693699145638 35 22.884832422976128 28.72555208338768 32.45532119871524 15.934294294920957 36 16.35860596227452 33.59626744851308 34.93771835095792 15.10740823825448 37 16.07602134774602 33.642872172632245 33.07126870927521 17.209837770346528 38 16.098628116908298 33.47540818260705 33.77607821246537 16.64988548801928 39 19.661976631556616 28.16786047797666 32.69043159800295 19.47973129246377 40 14.413902119645455 27.04534743995729 35.43158930804158 23.109161132355677 41 16.420165933685652 27.889797217280616 33.082745992080675 22.60729085695306 42 16.823783712344515 27.096125721460258 35.15300435267255 20.927086213522674 43 16.090802696813665 29.512789344907997 35.556274334882765 18.840133623395573 44 12.643792094238925 37.88303257635437 31.065004895235017 18.408170434171698 45 17.233661827079082 33.215082540792174 32.69703973052731 16.854215901601428 46 16.890386732261074 30.948145288488462 32.22351486568971 19.93795311356076 47 16.223487041973815 28.807979841717835 36.22856487012412 18.739968246184237 48 17.949948613074714 26.602776459049576 36.43880782333331 19.008467104542394 49 17.264963507457626 31.85745910348509 33.07961582404282 17.797961565014457 50 14.86777648513431 31.433669130804503 32.96936434982062 20.72919003424056 51 14.77874059427979 28.031350371881352 36.67061415635885 20.519294877480007 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 781.0 1 3925.0 2 7069.0 3 27484.5 4 47900.0 5 27477.5 6 7055.0 7 7115.5 8 7176.0 9 8688.0 10 10200.0 11 11338.0 12 12476.0 13 12405.5 14 12335.0 15 11030.0 16 9725.0 17 8319.0 18 6913.0 19 6125.5 20 5338.0 21 5126.0 22 4914.0 23 4495.5 24 4077.0 25 4222.5 26 4609.0 27 4850.0 28 5091.0 29 5332.0 30 6826.5 31 8321.0 32 9876.5 33 11432.0 34 12050.5 35 12669.0 36 13946.0 37 15223.0 38 17700.5 39 20178.0 40 25043.0 41 29908.0 42 36359.0 43 42810.0 44 48753.0 45 54696.0 46 55450.0 47 56204.0 48 49671.5 49 43139.0 50 36560.5 51 29982.0 52 26802.0 53 23622.0 54 21966.5 55 20311.0 56 17042.0 57 13773.0 58 12574.5 59 11376.0 60 9870.0 61 8364.0 62 7035.0 63 5706.0 64 4850.0 65 3994.0 66 3503.5 67 3013.0 68 2709.0 69 2405.0 70 2141.0 71 1877.0 72 1965.0 73 2053.0 74 1771.5 75 1251.0 76 1012.0 77 780.5 78 549.0 79 407.0 80 265.0 81 179.5 82 94.0 83 73.5 84 53.0 85 31.5 86 10.0 87 8.0 88 6.0 89 3.5 90 1.0 91 1.0 92 1.0 93 1.5 94 2.0 95 1.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 575049.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 33.75049251334313 #Duplication Level Percentage of deduplicated Percentage of total 1 78.49349928915142 26.49194260104609 2 9.35447248126299 6.3143610689028185 3 3.519088066985892 3.563128663758075 4 1.8777957292113205 2.5350612280133755 5 1.2354098664350035 2.0847845724012415 6 0.7826041069683203 1.584796443188753 7 0.5847304321408304 1.3814458050605094 8 0.4352000567281084 1.1750573005126823 9 0.300980712205923 0.9142422546570017 >10 2.511858964004941 18.314263516421363 >50 0.671870213314955 15.925182572617464 >100 0.22831048461790976 10.943526612460266 >500 0.0026122481077564042 0.5841790385105596 >1k 0.001044899243102562 1.0380507092398625 >5k 0.0 0.0 >10k+ 5.22449621551281E-4 7.149977613209986 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 40549 7.051399098163809 No Hit CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4183 0.727416272352443 No Hit CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1704 0.29632257425019437 No Hit CTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 775 0.13477112385205436 No Hit GTGTTGGGTTAACAGAGAAGTTATAGGTGGATTATTTATAGTGTGATTATT 726 0.126250110860118 No Hit CCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTTCTGC 658 0.11442503160600226 No Hit CTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTTCTGCT 601 0.10451283281946407 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.1112948635681481 0.0 2 0.0 0.0 0.0 0.36344728883973365 0.0 3 0.0 0.0 0.0 0.5872543035463065 0.0 4 0.0 0.0 0.0 0.7578484616093585 0.0 5 0.0 0.0 0.0 1.666118887260042 0.0 6 0.0 0.0 0.0 1.9525292627236983 0.0 7 0.0 0.0 0.0 2.7858495536902073 0.0 8 0.0 0.0 0.0 3.682990492984076 0.0 9 0.0 0.0 0.0 4.397886093185103 0.0 10 0.0 0.0 0.0 4.844630631476622 0.0 11 0.0 0.0 0.0 5.3663253044523165 0.0 12 0.0 0.0 0.0 5.8048966262005495 0.0 13 0.0 0.0 0.0 5.994097894266401 0.0 14 0.0 0.0 0.0 6.14695443344828 0.0 15 0.0 0.0 0.0 6.6733443584807555 0.0 16 0.0 0.0 0.0 7.257816290437859 0.0 17 0.0 0.0 0.0 8.114612841688274 0.0 18 0.0 0.0 0.0 8.462757086787386 0.0 19 0.0 0.0 0.0 8.906893151714028 0.0 20 0.0 0.0 0.0 9.31485838598102 0.0 21 3.4779644865046285E-4 0.0 0.0 9.730127345669674 0.0 22 5.216946729756942E-4 0.0 0.0 10.145222407134002 0.0 23 5.216946729756942E-4 0.0 0.0 10.451978874843709 0.0 24 0.004869150281106479 0.0 0.0 10.723781799464046 0.0 25 0.004869150281106479 0.0 0.0 10.985498627073518 0.0 26 0.004869150281106479 0.0 0.0 11.285299165810217 0.0 27 0.004869150281106479 0.0 0.0 11.539364471549382 0.0 28 0.005043048505431711 0.0 0.0 11.825948745237362 0.0 29 0.005043048505431711 0.0 0.0 12.184700782020315 0.0 30 0.0052169467297569425 0.0 0.0 12.504499616554416 0.0 31 0.0052169467297569425 0.0 0.0 12.769520510426068 0.0 32 0.0052169467297569425 0.0 0.0 13.054713598319447 0.0 33 0.0052169467297569425 0.0 0.0 13.339384991539852 0.0 34 0.0052169467297569425 0.0 0.0 13.692050590471421 0.0 35 0.0052169467297569425 0.0 0.0 14.010110442762269 0.0 36 0.0052169467297569425 0.0 0.0 14.304520136544886 0.0 37 0.0052169467297569425 0.0 0.0 14.609363723787016 0.0 38 0.0052169467297569425 0.0 0.0 14.934031708602223 0.0 39 0.0052169467297569425 0.0 0.0 15.255569525379576 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCACGAG 20 7.030344E-4 45.0 2 AGCGTTA 20 7.030344E-4 45.0 44 CTTCGAC 20 7.030344E-4 45.0 31 CGGAACG 20 7.030344E-4 45.0 29 CTGTCGG 20 7.030344E-4 45.0 1 AGATCTA 20 7.030344E-4 45.0 37 AAATCGT 25 3.888366E-5 45.0 11 ACCGGGT 20 7.030344E-4 45.0 3 CGAACCT 20 7.030344E-4 45.0 21 GTCGATA 20 7.030344E-4 45.0 15 GTATTCC 45 3.8380676E-10 45.0 10 AATCAAT 20 7.030344E-4 45.0 45 TGCTTAG 20 7.030344E-4 45.0 12 CGCGGTA 25 3.888366E-5 45.0 37 TGCCAGG 20 7.030344E-4 45.0 1 CGCGGGT 50 2.1827873E-11 45.0 3 ACGTTGG 50 2.1827873E-11 45.0 1 CGCGGAA 20 7.030344E-4 45.0 27 CTATCGG 25 3.888366E-5 45.0 1 CGTGCCT 20 7.030344E-4 45.0 35 >>END_MODULE