SRR1043403_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043403_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1480366
Sequences flagged as poor quality	0
Sequence length	51
%GC	39

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	71786	4.84920620981568	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7459	0.5038618828046577	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2913	0.19677566223487977	No Hit
GCGAAGGGTCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCA	1673	0.11301259283177267	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGCGAT	30	2.165927E-6	45.000004	22
ACCGGCG	65	0.0	45.000004	19
CACGGCA	30	2.165927E-6	45.000004	3
ACGGCAG	20	7.0339453E-4	45.000004	4
GTATCGC	20	7.0339453E-4	45.000004	16
GCGTCAT	65	0.0	45.000004	36
ATCGCCT	20	7.0339453E-4	45.000004	16
TCGCGAT	20	7.0339453E-4	45.000004	45
GATCGTC	25	3.8913517E-5	45.0	8
CTCCGAT	25	3.8913517E-5	45.0	26
TTTCGAT	25	3.8913517E-5	45.0	15
GTCACGG	205	0.0	45.0	1
TGTTCGA	25	3.8913517E-5	45.0	11
ACGTCCG	90	0.0	45.0	39
CGATGTA	45	3.8562575E-10	45.0	9
GCGCTTA	25	3.8913517E-5	45.0	45
CGGACTA	25	3.8913517E-5	45.0	5
CTAGCGA	25	3.8913517E-5	45.0	1
CGTTTTT	19195	0.0	44.29669	1
ATTGCGG	365	0.0	43.767124	1