SRR1043402_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043402_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1258576
Sequences flagged as poor quality	0
Sequence length	51
%GC	37

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	79212	6.293779636668743	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8007	0.6361951920265443	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3295	0.26180381637660344	No Hit
GTGTTGGGTTAACAGAGAAGTTATAGGTGGATTATTTATAGTGTGATTATT	1435	0.11401774704110042	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAGTCGG	45	3.8562575E-10	45.000004	1
CTGTCGG	40	6.8157533E-9	45.0	1
CGTGCTA	20	7.0335425E-4	45.0	44
CGCATTA	20	7.0335425E-4	45.0	14
TAGGTCG	20	7.0335425E-4	45.0	41
CGCGATA	20	7.0335425E-4	45.0	10
CAGATCG	20	7.0335425E-4	45.0	17
TGTTACG	20	7.0335425E-4	45.0	14
AGCGATA	20	7.0335425E-4	45.0	7
CGGTCTA	145	0.0	45.0	30
CGATCGA	20	7.0335425E-4	45.0	9
GCGTCAA	20	7.0335425E-4	45.0	22
CCGCATT	20	7.0335425E-4	45.0	13
GCCGTGA	20	7.0335425E-4	45.0	31
CCCGCAT	20	7.0335425E-4	45.0	12
CTTCGTA	30	2.165667E-6	44.999996	19
CAGCGCA	25	3.891019E-5	44.999996	11
CGGTTAG	25	3.891019E-5	44.999996	30
TCGATAT	25	3.891019E-5	44.999996	24
CGTTTTT	17540	0.0	44.40992	1