SRR1043401_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043401_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2312724
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	69480	3.0042495343153788	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	16533	0.7148712946291905	No Hit
GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	7774	0.33614041277731366	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7607	0.32891949060934206	No Hit
GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	7487	0.32373080402157806	No Hit
AGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	2985	0.1290685788706305	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2910	0.12582564975327795	No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA	2802	0.12115583182429031	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCATAA	20	7.0347695E-4	45.0	29
ATACGTT	25	3.8920356E-5	45.0	13
CGACGGT	1035	0.0	44.56522	27
CGGTCTA	1040	0.0	44.35096	30
CACGACG	1050	0.0	44.14286	25
CGTTTTT	21080	0.0	43.815228	1
TCACGAC	1090	0.0	43.76147	24
CTTGCGG	635	0.0	42.519684	1
ACGTAGG	265	0.0	42.45283	1
CTAACCT	1120	0.0	42.388397	14
GACGGTC	1110	0.0	41.554054	28
TTCCGTA	190	0.0	41.44737	45
ACGGGCT	810	0.0	41.388885	4
ACGGTCT	1120	0.0	41.38393	29
CACTTAC	5435	0.0	41.149956	36
CTTACTG	5400	0.0	41.083332	38
CGCACTT	5435	0.0	41.02576	34
CCGCACT	5440	0.0	40.946693	33
CTAGCGG	860	0.0	40.813953	1
GCGCGAC	2540	0.0	40.74803	8