SRR1043400_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043400_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1685961
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	65773	3.901217169317677	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	11536	0.6842388406374762	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7468	0.44295212048202776	No Hit
GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	5637	0.3343493710708611	No Hit
GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	4727	0.2803742198069825	No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA	3773	0.2237892810094658	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3078	0.1825665006485915	No Hit
TGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	2721	0.16139163361430067	No Hit
AGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	2499	0.1482240692400358	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG	2382	0.14128440693468	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACTTATG	30	2.1661072E-6	45.000004	44
CGACGTA	20	7.034226E-4	45.0	36
TATGCGA	20	7.034226E-4	45.0	1
GTATATC	20	7.034226E-4	45.0	7
AATACGG	25	3.8915834E-5	45.0	1
ATACCCG	25	3.8915834E-5	45.0	38
TCTATCG	20	7.034226E-4	45.0	25
CAGACGA	35	1.2123746E-7	45.0	1
ACATACG	385	0.0	44.415585	16
ACGGGTA	225	0.0	44.0	4
CGTTTTT	15840	0.0	43.991478	1
CATGCGG	320	0.0	43.59375	1
TCACGAC	1235	0.0	42.813763	24
TTAACGG	90	0.0	42.500004	1
ATCGGGT	85	0.0	42.35294	3
CATATGC	1155	0.0	42.272728	32
CACTTAC	4005	0.0	42.247192	36
TAGTAGG	475	0.0	42.157894	1
ACGGTCT	1210	0.0	42.02479	29
CGCACTT	4015	0.0	41.97385	34