SRR1043399_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043399_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	3158269
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	104008	3.2931963680104515	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	26588	0.8418535596556216	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	11340	0.3590574457083928	No Hit
GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	10088	0.31941547727568487	No Hit
GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	8159	0.25833771600835775	No Hit
AGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	4769	0.1510004372648435	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4605	0.14580771935512776	No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA	4160	0.13171772258791128	No Hit
TGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	3973	0.125796757654272	No Hit
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG	3166	0.10024478598878056	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TATGCGA	30	2.166711E-6	45.000004	1
GACGTAT	20	7.035162E-4	45.0	37
CGTTTTT	31185	0.0	43.59307	1
ACTACGG	190	0.0	42.63158	1
TACGGGT	335	0.0	42.313435	3
CACTTAC	8240	0.0	41.204494	36
CTTACTG	8245	0.0	40.96119	38
TAGCATA	2105	0.0	40.831352	29
ACTTACT	8330	0.0	40.65126	37
CGCACTT	8350	0.0	40.607784	34
AAACACG	710	0.0	40.56338	39
GGTACCT	2065	0.0	40.423725	7
ATCCTGC	2200	0.0	40.295456	19
CGTTTTA	1620	0.0	40.27778	1
CATATGC	2140	0.0	40.268692	32
CATGCGG	605	0.0	40.16529	1
GCACTTA	8465	0.0	40.162437	35
CCGCACT	8465	0.0	40.162437	33
GCATATG	2165	0.0	40.115475	31
ACCCGCA	8590	0.0	39.630383	31