SRR1043398_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043398_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	779695
Sequences flagged as poor quality	0
Sequence length	51
%GC	38

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	45376	5.819711553876837	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4860	0.6233206574365617	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1912	0.24522409403677078	No Hit
GTGTTGGGTTAACAGAGAAGTTATAGGTGGATTATTTATAGTGTGATTATT	1120	0.14364591282488665	No Hit
CTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	879	0.11273639051167443	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTAGCGG	135	0.0	45.000004	1
ACTATTG	20	7.031889E-4	45.0	16
AGCCGGA	25	3.889647E-5	45.0	10
GTACCGG	45	3.8380676E-10	45.0	1
GATAATG	20	7.031889E-4	45.0	8
CCCTCGA	20	7.031889E-4	45.0	20
ATTAGCG	20	7.031889E-4	45.0	9
CTCCGGT	40	6.8102963E-9	45.0	30
CTCCGAT	20	7.031889E-4	45.0	14
CACGGCG	20	7.031889E-4	45.0	3
GCGAATA	25	3.889647E-5	45.0	27
TTAGCGT	20	7.031889E-4	45.0	10
GACAATC	20	7.031889E-4	45.0	30
CGCATAT	20	7.031889E-4	45.0	17
CGACCCC	45	3.8380676E-10	45.0	19
TCGATGG	70	0.0	45.0	1
TTATCGG	25	3.889647E-5	45.0	1
AATGCGG	50	2.1827873E-11	45.0	1
CTACGTC	20	7.031889E-4	45.0	13
AGTTGCG	20	7.031889E-4	45.0	13