SRR1043397_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043397_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	861574
Sequences flagged as poor quality	0
Sequence length	51
%GC	39

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	38787	4.501876797582099	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4032	0.4679806957962984	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1489	0.17282322818469453	No Hit
GTGTTGGGTTAACAGAGAAGTTATAGGTGGATTATTTATAGTGTGATTATT	1034	0.12001290661045945	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGTTTCG	25	3.8899903E-5	45.0	44
GATCGGA	20	7.032303E-4	45.0	8
GTCGACA	20	7.032303E-4	45.0	13
ACGTTGG	25	3.8899903E-5	45.0	1
CACATCG	25	3.8899903E-5	45.0	16
TCGATTG	25	3.8899903E-5	45.0	13
CTGGTCG	20	7.032303E-4	45.0	43
ATCGTAA	25	3.8899903E-5	45.0	13
CGTTAGC	20	7.032303E-4	45.0	18
TGGCATA	20	7.032303E-4	45.0	25
CGTTACT	25	3.8899903E-5	45.0	28
AAACGCG	20	7.032303E-4	45.0	20
AACGGAC	50	2.1827873E-11	45.0	14
CCCGTAC	20	7.032303E-4	45.0	36
CATACGT	40	6.8121153E-9	45.0	12
ACGTCTT	20	7.032303E-4	45.0	28
CGTAAGT	20	7.032303E-4	45.0	38
CGTAAGG	20	7.032303E-4	45.0	1
GCGTCAA	25	3.8899903E-5	45.0	22
AATACGT	20	7.032303E-4	45.0	21