SRR1043396_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043396_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1229049
Sequences flagged as poor quality	0
Sequence length	51
%GC	39

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	54353	4.4223623305498805	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5702	0.4639359374605894	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2253	0.1833124635388825	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACTACGG	45	3.8562575E-10	45.000004	1
TACCGTC	35	1.212029E-7	45.000004	18
CTAAGCG	25	3.890964E-5	45.0	22
AATGCGC	20	7.0334785E-4	45.0	40
CCGTAGA	20	7.0334785E-4	45.0	39
CGGATAG	20	7.0334785E-4	45.0	29
CTCGCTA	25	3.890964E-5	45.0	9
ACGTCCG	80	0.0	45.0	39
CGACTGG	25	3.890964E-5	45.0	1
CGACTCA	25	3.890964E-5	45.0	21
CGGTACG	20	7.0334785E-4	45.0	21
ATACCGT	20	7.0334785E-4	45.0	16
GTACGTC	20	7.0334785E-4	45.0	23
TACGTCG	20	7.0334785E-4	45.0	24
CTAGCGG	315	0.0	44.285713	1
CGTTTTT	14035	0.0	44.1824	1
TTCACGG	195	0.0	42.692307	1
ACGGGAT	855	0.0	42.368423	4
CACGTCC	85	0.0	42.35294	38
CCACGTC	85	0.0	42.35294	37