##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1043396_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1229049 Sequences flagged as poor quality 0 Sequence length 51 %GC 39 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.530171701860546 31.0 31.0 33.0 30.0 34.0 2 30.576322831717857 31.0 31.0 34.0 26.0 34.0 3 31.50143647649524 31.0 31.0 34.0 28.0 34.0 4 35.11016810558407 37.0 35.0 37.0 32.0 37.0 5 35.42559735209906 37.0 35.0 37.0 33.0 37.0 6 35.834300341158084 37.0 35.0 37.0 35.0 37.0 7 33.78930132159092 37.0 35.0 37.0 32.0 37.0 8 34.788331466035935 37.0 35.0 37.0 31.0 37.0 9 36.7535061661496 39.0 37.0 39.0 32.0 39.0 10 36.64951763517972 39.0 35.0 39.0 32.0 39.0 11 36.530051283553384 39.0 35.0 39.0 32.0 39.0 12 36.48252022498696 39.0 35.0 39.0 32.0 39.0 13 36.5385139241804 39.0 35.0 39.0 32.0 39.0 14 37.86526005065705 40.0 36.0 41.0 33.0 41.0 15 37.98498595255356 40.0 36.0 41.0 33.0 41.0 16 37.93772258062941 40.0 36.0 41.0 33.0 41.0 17 37.89132898688335 40.0 36.0 41.0 33.0 41.0 18 37.672999205076444 39.0 36.0 41.0 33.0 41.0 19 37.42723845835276 39.0 36.0 41.0 33.0 41.0 20 37.15089390252138 39.0 35.0 41.0 33.0 41.0 21 37.05096786214382 38.0 35.0 41.0 32.0 41.0 22 36.967990698499406 38.0 35.0 41.0 32.0 41.0 23 36.90355225869758 38.0 35.0 40.0 32.0 41.0 24 36.770564883906175 38.0 35.0 40.0 32.0 41.0 25 36.66986507454137 38.0 35.0 40.0 32.0 41.0 26 36.38817980405989 38.0 35.0 40.0 31.0 41.0 27 36.305181485848 38.0 35.0 40.0 31.0 41.0 28 36.21946806026448 37.0 35.0 40.0 31.0 41.0 29 36.16771910639852 37.0 35.0 40.0 31.0 41.0 30 35.97144947028149 37.0 35.0 40.0 30.0 41.0 31 35.588039207549905 37.0 35.0 40.0 29.0 41.0 32 35.436840191074566 38.0 35.0 40.0 28.0 41.0 33 35.31415997246652 38.0 35.0 40.0 27.0 41.0 34 35.11788219997738 38.0 35.0 40.0 25.0 41.0 35 34.91916514313099 38.0 35.0 40.0 24.0 41.0 36 34.762160011521104 38.0 34.0 40.0 23.0 41.0 37 34.67803236486096 37.0 34.0 40.0 23.0 41.0 38 34.59207891630032 37.0 34.0 40.0 23.0 41.0 39 34.450155364025356 37.0 34.0 40.0 22.0 41.0 40 34.37672297849801 37.0 34.0 40.0 22.0 41.0 41 34.27688643821361 37.0 34.0 40.0 21.0 41.0 42 34.176675624812354 37.0 34.0 40.0 21.0 41.0 43 34.02939183059422 36.0 34.0 40.0 20.0 41.0 44 33.8383319135364 36.0 33.0 40.0 19.0 41.0 45 33.66764384495655 36.0 33.0 40.0 19.0 41.0 46 33.665001964933865 36.0 33.0 40.0 20.0 41.0 47 33.647414382990426 36.0 33.0 40.0 20.0 41.0 48 33.58790658468458 36.0 33.0 40.0 20.0 41.0 49 33.49034253312927 35.0 33.0 40.0 18.0 41.0 50 33.38022650032668 35.0 33.0 40.0 18.0 41.0 51 32.94204136694306 35.0 32.0 40.0 18.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 2.0 11 4.0 12 7.0 13 14.0 14 33.0 15 56.0 16 136.0 17 319.0 18 659.0 19 1234.0 20 2157.0 21 3378.0 22 5379.0 23 8336.0 24 13345.0 25 20176.0 26 25870.0 27 27778.0 28 27726.0 29 28265.0 30 30860.0 31 36502.0 32 44871.0 33 57680.0 34 97682.0 35 135250.0 36 122130.0 37 117314.0 38 159914.0 39 261861.0 40 111.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 26.05567393976969 18.527577012796073 25.935662451212277 29.481086596221957 2 30.616761414719836 21.36700815020394 28.989405629881315 19.026824805194913 3 22.025403380988067 21.87878595564538 36.12532942136563 19.97048124200093 4 22.85832379343704 25.187523036103528 33.29468556583179 18.659467604627643 5 20.366478472379864 32.25908812423264 30.872894408603724 16.501538994783772 6 81.13289217923777 1.8488278335526087 15.842330126789086 1.1759498604205365 7 77.47388427963409 6.948136323287354 14.354757214724556 1.223222182353999 8 77.47494200800782 3.9371904618937084 16.632127767078448 1.9557397630200262 9 36.187003121925976 32.04184698901346 22.240529059459792 9.530620829600773 10 25.586449360440472 23.80149204791672 38.64972023084515 11.962338360797657 11 25.0216224088706 21.581727010070388 38.50993735807116 14.886713222987854 12 18.221079875578596 29.42518971985657 37.118861819178896 15.234868585385936 13 15.464639733647722 32.2744658675122 36.419540636703665 15.841353762136414 14 14.101797405961843 25.622168033984 44.32077158843952 15.955262971614639 15 16.377866138778842 23.788067033942504 42.98152473985984 16.852542087418808 16 17.394261742208812 23.706133766839237 36.41148562831913 22.488118862632817 17 17.144231027404114 24.17967062338442 40.94499080183133 17.73110754738013 18 20.157861891592603 25.855112367366967 36.72026094972617 17.26676479131426 19 21.384745441394116 26.06698349699646 36.046732066825655 16.501538994783772 20 17.78928260793508 27.909302232864597 37.287772904090886 17.01364225510944 21 18.310824059903226 24.149566046593748 36.64971860357073 20.889891289932297 22 15.157003504335464 26.609760880160188 37.79304161184786 20.440194003656487 23 14.470456426066008 24.182518353621376 44.55225137484348 16.794773845469138 24 15.70246589029404 26.629206809492544 40.2602337254251 17.40809357478831 25 16.582902715839644 29.93119070110305 36.51384118940742 16.97206539364989 26 15.007212893871602 30.33019838916105 36.72953641392654 17.933052303040807 27 15.019986998077375 27.69401382695076 40.43337572383201 16.852623451139863 28 14.616911123966577 25.853403729224787 39.31055637326095 20.21912877354768 29 15.615488072485311 28.42677549877995 38.57022787537356 17.387508553361176 30 19.365460612229455 28.85605049107074 35.568150659575004 16.2103382371248 31 20.146633698086895 27.865772642099707 34.92684181021261 17.060751849600788 32 19.05603438105397 29.461233848284323 34.51302592492244 16.969705845739266 33 16.55442541347009 28.380560905220214 34.96394366701409 20.101070014295605 34 15.997328015400525 28.38381545406245 35.591176592633815 20.02767993790321 35 20.716423836641177 27.871630830015725 33.88261981418154 17.529325519161564 36 16.794448390584915 30.78249931451065 34.45867495925712 17.964377335647317 37 16.819833871554348 30.307660638428572 34.19684650489931 18.675658985117764 38 17.377663543113414 30.81797389689101 33.032775747752936 18.771586812242635 39 19.904657991666728 28.065927395897155 32.896816969868574 19.132597642567546 40 16.663127344800735 27.83265760762996 34.13785780713381 21.36635724043549 41 18.505771535553098 28.20294390215524 31.94063052001995 21.350654042271707 42 18.100987023300128 28.12393972900999 32.99827753002525 20.776795717664633 43 17.583757848547943 28.972319248459584 33.99229811016485 19.451624792827626 44 16.15598727145948 32.98485251605103 31.42543543829416 19.433724774195333 45 18.600641634304246 30.278044243964235 32.44118013195568 18.680133989775836 46 17.568380105268382 30.464285801461127 31.44455591274229 20.5227781805282 47 17.454959078116495 29.011292470845344 33.51103170011936 20.0227167509188 48 18.332954992030423 27.650646963627977 34.31140662414599 19.704991420195615 49 17.94834868259931 30.270151963021817 32.70919222911373 19.072307125265144 50 16.873615291172282 29.600203083847752 32.81008324322301 20.716098381756954 51 16.647342782915896 28.14216520252651 33.951372158473745 21.25911985608385 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 941.0 1 5718.5 2 10496.0 3 40442.0 4 70388.0 5 42445.5 6 14503.0 7 14189.5 8 13876.0 9 15354.0 10 16832.0 11 18366.0 12 19900.0 13 19629.0 14 19358.0 15 17552.0 16 15746.0 17 14376.5 18 13007.0 19 12026.0 20 11045.0 21 11258.0 22 11471.0 23 11000.0 24 10529.0 25 11850.5 26 15113.5 27 17055.0 28 18766.5 29 20478.0 30 23409.5 31 26341.0 32 30204.5 33 34068.0 34 39414.0 35 44760.0 36 46705.5 37 48651.0 38 49963.5 39 51276.0 40 58293.0 41 65310.0 42 72277.5 43 79245.0 44 83282.5 45 87320.0 46 86088.0 47 84856.0 48 82956.5 49 81057.0 50 78255.0 51 75453.0 52 72098.0 53 68743.0 54 60750.0 55 52757.0 56 46782.5 57 40808.0 58 36328.0 59 31848.0 60 27074.5 61 22301.0 62 18650.5 63 15000.0 64 12754.5 65 10509.0 66 8908.5 67 7308.0 68 6419.5 69 5531.0 70 4914.0 71 4297.0 72 4715.0 73 5133.0 74 4222.5 75 2814.0 76 2316.0 77 1694.0 78 1072.0 79 805.5 80 539.0 81 388.0 82 237.0 83 178.5 84 120.0 85 82.5 86 45.0 87 32.0 88 19.0 89 13.0 90 7.0 91 7.5 92 8.0 93 5.5 94 3.0 95 2.0 96 1.0 97 1.0 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1229049.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 32.72937980385432 #Duplication Level Percentage of deduplicated Percentage of total 1 79.18042874526743 25.915263254358823 2 8.885015333892127 5.816020828520499 3 3.2082625798422684 3.1501333345845337 4 1.706134871902001 2.2336294487632373 5 1.0385561893137356 1.699564998384644 6 0.7360229380802189 1.4453744570865743 7 0.5141708423917585 1.1779944949295307 8 0.3887725501710383 1.017942756148874 9 0.3283069821523033 0.9670755520007962 >10 3.007995206971467 22.168291507729364 >50 0.773037987569083 17.65468444563761 >100 0.2291893562108771 10.69382433301101 >500 0.002823161162030674 0.6437781871634164 >1k 7.699530441901837E-4 0.37178526309828824 >5k 2.5665101473006124E-4 0.4789696272450157 >10k+ 2.5665101473006124E-4 4.5656675113378355 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 54353 4.4223623305498805 No Hit CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5702 0.4639359374605894 No Hit CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2253 0.1833124635388825 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.05939551637078749 0.0 2 0.0 0.0 0.0 0.19218110913397268 0.0 3 0.0 0.0 0.0 0.3157726014178442 0.0 4 0.0 0.0 0.0 0.3996585978264496 0.0 5 0.0 0.0 0.0 0.8564345278341221 0.0 6 0.0 0.0 0.0 0.9858028443129607 0.0 7 0.0 0.0 0.0 1.3805796188760577 0.0 8 0.0 0.0 0.0 1.8197809851356619 0.0 9 0.0 0.0 0.0 2.1686686210232464 0.0 10 0.0 0.0 0.0 2.4085288706959607 0.0 11 0.0 0.0 0.0 2.697939626491702 0.0 12 0.0 0.0 0.0 2.953340346886088 0.0 13 0.0 0.0 0.0 3.0690395582275403 0.0 14 0.0 0.0 0.0 3.1602482895311743 0.0 15 0.0 0.0 0.0 3.4696745207066604 0.0 16 0.0 0.0 0.0 3.8727503948174564 0.0 17 0.0 0.0 0.0 4.355155896957729 0.0 18 0.0 0.0 0.0 4.618367534573479 0.0 19 0.0 0.0 0.0 4.915101025264249 0.0 20 0.0 0.0 0.0 5.230873626682094 0.0 21 0.0 0.0 0.0 5.566254884874403 0.0 22 0.0 0.0 0.0 5.9264520779887535 0.0 23 8.136372105587328E-5 0.0 0.0 6.234901944511569 0.0 24 4.0681860527936643E-4 0.0 0.0 6.498764491895766 0.0 25 4.0681860527936643E-4 0.0 0.0 6.750747936005806 0.0 26 4.0681860527936643E-4 0.0 0.0 7.006555475005472 0.0 27 4.0681860527936643E-4 0.0 0.0 7.269360294015942 0.0 28 4.0681860527936643E-4 0.0 0.0 7.566500603311992 0.0 29 4.0681860527936643E-4 0.0 0.0 7.916852786178582 0.0 30 4.0681860527936643E-4 0.0 0.0 8.23669357364922 0.0 31 4.0681860527936643E-4 0.0 0.0 8.51528295454453 0.0 32 4.0681860527936643E-4 0.0 0.0 8.810795989419463 0.0 33 4.0681860527936643E-4 0.0 0.0 9.126568590837305 0.0 34 4.0681860527936643E-4 0.0 0.0 9.492786699309791 0.0 35 4.0681860527936643E-4 0.0 0.0 9.827272956570487 0.0 36 4.0681860527936643E-4 0.0 0.0 10.158667392431058 0.0 37 4.0681860527936643E-4 0.0 0.0 10.516179582750565 0.0 38 8.136372105587329E-4 0.0 0.0 10.864416308869703 0.0 39 8.136372105587329E-4 0.0 0.0 11.237468969910882 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACTACGG 45 3.8562575E-10 45.000004 1 TACCGTC 35 1.212029E-7 45.000004 18 CTAAGCG 25 3.890964E-5 45.0 22 AATGCGC 20 7.0334785E-4 45.0 40 CCGTAGA 20 7.0334785E-4 45.0 39 CGGATAG 20 7.0334785E-4 45.0 29 CTCGCTA 25 3.890964E-5 45.0 9 ACGTCCG 80 0.0 45.0 39 CGACTGG 25 3.890964E-5 45.0 1 CGACTCA 25 3.890964E-5 45.0 21 CGGTACG 20 7.0334785E-4 45.0 21 ATACCGT 20 7.0334785E-4 45.0 16 GTACGTC 20 7.0334785E-4 45.0 23 TACGTCG 20 7.0334785E-4 45.0 24 CTAGCGG 315 0.0 44.285713 1 CGTTTTT 14035 0.0 44.1824 1 TTCACGG 195 0.0 42.692307 1 ACGGGAT 855 0.0 42.368423 4 CACGTCC 85 0.0 42.35294 38 CCACGTC 85 0.0 42.35294 37 >>END_MODULE