SRR1043395_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043395_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	804207
Sequences flagged as poor quality	0
Sequence length	51
%GC	39

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	42241	5.252503397757045	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4608	0.5729868056358625	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1804	0.22432035533140102	No Hit
GTGTTGGGTTAACAGAGAAGTTATAGGTGGATTATTTATAGTGTGATTATT	1169	0.14536058502350763	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	1162	0.1444901623586962	No Hit
CTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	822	0.10221249006785565	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GGTTACT	30	2.1646847E-6	45.000004	8
TTTAGCG	25	3.8897575E-5	45.0	23
AACCGTA	20	7.0320227E-4	45.0	36
AACCGGT	25	3.8897575E-5	45.0	35
CGAACCT	20	7.0320227E-4	45.0	23
CTCGTCG	20	7.0320227E-4	45.0	39
TTTACGG	50	2.1827873E-11	45.0	1
CGCGGAT	20	7.0320227E-4	45.0	22
CCCTAAG	35	1.2113196E-7	45.0	18
TTATGTC	20	7.0320227E-4	45.0	14
TAGGTCG	20	7.0320227E-4	45.0	1
CATTGCG	20	7.0320227E-4	45.0	12
CGCATAC	25	3.8897575E-5	45.0	23
CAACCCG	25	3.8897575E-5	45.0	22
GCACGCT	25	3.8897575E-5	45.0	23
ATTGTCG	25	3.8897575E-5	45.0	35
TACGGTA	20	7.0320227E-4	45.0	44
TTATCGG	20	7.0320227E-4	45.0	1
ATCCGGA	25	3.8897575E-5	45.0	10
CCGTATG	20	7.0320227E-4	45.0	34