SRR1043394_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043394_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1136632
Sequences flagged as poor quality	0
Sequence length	51
%GC	38

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	61925	5.448113373545704	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6679	0.587613229259778	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2587	0.22760224945276922	No Hit
CTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1211	0.1065428388431788	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCGCAG	95	0.0	45.000004	34
GTACCGG	20	7.0332544E-4	45.0	1
CGACGTG	20	7.0332544E-4	45.0	24
CGAGTAC	20	7.0332544E-4	45.0	16
TAGCGTA	20	7.0332544E-4	45.0	38
CCTACGG	20	7.0332544E-4	45.0	11
TTCGTGG	70	0.0	45.0	1
TCGATCT	20	7.0332544E-4	45.0	10
GCGCAGA	20	7.0332544E-4	45.0	1
CCGTCGC	40	6.8157533E-9	45.0	29
CGTTAGG	20	7.0332544E-4	45.0	38
ACCTATC	50	2.1827873E-11	45.0	20
CTAACGG	55	1.8189894E-12	45.0	1
CGCTAGC	35	1.2119199E-7	45.0	36
ACAATCG	20	7.0332544E-4	45.0	9
CGTGTAT	20	7.0332544E-4	45.0	21
ACGTAGG	70	0.0	45.0	1
CCGCGAA	25	3.890779E-5	45.0	18
CGACTTT	20	7.0332544E-4	45.0	15
GACGATT	35	1.2119199E-7	45.0	8