SRR1043393_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043393_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1225225
Sequences flagged as poor quality	0
Sequence length	51
%GC	39

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	50336	4.1083066375563675	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5495	0.4484890530310759	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2227	0.1817625334122304	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCACGTC	35	1.2120108E-7	45.000004	37
TATCACG	20	7.03347E-4	45.0	33
ATCTACG	20	7.03347E-4	45.0	11
ACGTTAC	25	3.890958E-5	45.0	23
CGCATCG	20	7.03347E-4	45.0	20
GCCGGAT	25	3.890958E-5	45.0	17
CGACATC	20	7.03347E-4	45.0	10
CGTTACA	25	3.890958E-5	45.0	24
ACGATAA	25	3.890958E-5	45.0	17
CGTAGTC	20	7.03347E-4	45.0	30
TTGACGT	20	7.03347E-4	45.0	17
TTGACGG	100	0.0	45.0	1
CACAGCG	25	3.890958E-5	45.0	45
GCGATCG	45	3.8562575E-10	45.0	8
GCGATAT	80	0.0	45.0	8
AACTCGC	20	7.03347E-4	45.0	12
GCGTCTC	20	7.03347E-4	45.0	8
ATACCCG	20	7.03347E-4	45.0	30
GCGAATA	30	2.1656197E-6	44.999996	16
TCTTCGC	30	2.1656197E-6	44.999996	1