SRR1043392_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043392_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	3264783
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	121712	3.728027253266144	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	32893	1.0075095343243334	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	12405	0.37996399760719163	No Hit
GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	11684	0.35787983458624967	No Hit
GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	8364	0.2561885430057679	No Hit
AGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	5450	0.1669329937089234	No Hit
TGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	5353	0.16396189271997558	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5104	0.15633504585143945	No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA	5010	0.1534558345837993	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	37200	44.141125	1
CGTTTTA	1960	42.589287	1
CGCACTT	10040	41.436756	34
CCCGCAC	10150	41.253696	32
ACCCGCA	10055	41.2183	31
CCGCACT	10130	41.09082	33
GCACTTA	10170	40.88496	35
CTTACTG	10100	40.633667	38
TAGGGCG	1125	40.6	4
ACTACGG	240	40.312496	1
CTAGCGG	875	40.114285	1
CAACGCA	10760	40.044147	16
TCAACGC	10795	39.97684	15
CGCAAGC	10780	39.907238	19
ATCAACG	10810	39.900555	14
AACGCAA	10780	39.865494	17
ACGCAAG	10790	39.8494	18
TGACCCG	10420	39.731285	29
CACTTAC	10475	39.694508	36
GCTTATG	10775	39.61253	24