SRR1043391_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043391_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	3599051
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	106098	2.9479437774013206	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	25284	0.7025185250222906	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	10786	0.2996901127547234	No Hit
GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	8703	0.241813744789946	No Hit
GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	7480	0.20783256475109688	No Hit
TGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	5212	0.14481595287202098	No Hit
AGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	4703	0.1306733358321402	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4399	0.12222666475134696	No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA	4127	0.11466911694221617	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TATGCGA	30	2.1667965E-6	44.999996	1
CGTTTTT	32875	0.0	43.774902	1
TATACGG	210	0.0	40.714287	1
CACTTAC	8025	0.0	40.542053	36
TTATCGG	145	0.0	40.34483	1
CGCACTT	8055	0.0	40.30726	34
ACCCGCA	8070	0.0	40.12082	31
CCGCACT	8095	0.0	40.0803	33
GCACTTA	8135	0.0	39.938538	35
ACTTACT	8115	0.0	39.926064	37
CTTACTG	8115	0.0	39.926064	38
CCCGCAC	8215	0.0	39.63177	32
ACTACGG	195	0.0	39.23077	1
TATGACC	8375	0.0	39.223877	27
AACGCAA	8615	0.0	39.123623	17
CAACGCA	8600	0.0	39.113373	16
TCAACGC	8630	0.0	39.08169	15
CGCAAGC	8660	0.0	38.998264	19
ATCAACG	8660	0.0	38.972282	14
TTATGAC	8470	0.0	38.916767	26