SRR1043390_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043390_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2970474
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	117006	3.938967316327293	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	22620	0.7614946301499357	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	12107	0.4075780498331243	No Hit
GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	8788	0.2958450402191704	No Hit
GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	6357	0.21400624950765434	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5016	0.16886193920566211	No Hit
TGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	4013	0.1350962842967149	No Hit
AGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC	3822	0.12866633405981673	No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA	3184	0.1071882803889211	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	33555	0.0	44.16853	1
CGGTCTA	505	0.0	41.881184	30
TATACGG	210	0.0	41.785713	1
GTTGATC	2295	0.0	41.7647	15
TACGGGA	455	0.0	41.53846	3
CACTTAC	6580	0.0	41.44377	36
ACTTACT	6595	0.0	41.17892	37
CGCACTT	6615	0.0	41.156467	34
GCACTTA	6615	0.0	41.156467	35
TCACGAC	525	0.0	41.14286	24
CTTACTG	6610	0.0	41.051437	38
CGTTTTA	1620	0.0	40.972225	1
CCGCACT	6690	0.0	40.79596	33
GGTACCT	2220	0.0	40.743244	7
TACGCGG	355	0.0	40.56338	1
CCCGCAC	6810	0.0	40.539646	32
CACGACG	535	0.0	40.373833	25
ACCCGCA	6800	0.0	40.33456	31
TTATCGG	45	1.9301297E-8	40.0	1
CATATGC	2350	0.0	39.92553	32