##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1043390_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2970474 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.529862237474557 31.0 31.0 33.0 30.0 34.0 2 30.57000431580953 31.0 31.0 34.0 26.0 34.0 3 31.532069629291488 31.0 31.0 34.0 28.0 34.0 4 35.15537924250473 37.0 35.0 37.0 32.0 37.0 5 35.47180281665485 37.0 35.0 37.0 33.0 37.0 6 35.76950378963088 37.0 35.0 37.0 35.0 37.0 7 33.754804115437466 37.0 35.0 37.0 32.0 37.0 8 34.750655282624926 37.0 35.0 37.0 31.0 37.0 9 36.78804830474867 39.0 37.0 39.0 32.0 39.0 10 36.7426141417161 39.0 35.0 39.0 32.0 39.0 11 36.42755095651401 39.0 35.0 39.0 32.0 39.0 12 36.40480610165246 39.0 35.0 39.0 32.0 39.0 13 36.41605784127382 39.0 35.0 39.0 32.0 39.0 14 37.58995332058116 40.0 35.0 41.0 33.0 41.0 15 37.65227266759447 40.0 35.0 41.0 33.0 41.0 16 37.40932053268266 40.0 35.0 41.0 32.0 41.0 17 37.337788177913694 40.0 35.0 41.0 32.0 41.0 18 37.191608813946864 39.0 35.0 41.0 32.0 41.0 19 37.01402873750115 38.0 35.0 41.0 32.0 41.0 20 36.747295886111104 38.0 35.0 40.0 32.0 41.0 21 36.64173630201779 38.0 35.0 40.0 32.0 41.0 22 36.593728139010814 38.0 35.0 40.0 32.0 41.0 23 36.550255952417025 38.0 35.0 40.0 32.0 41.0 24 36.41537680518328 37.0 35.0 40.0 31.0 41.0 25 36.30597978639099 37.0 35.0 40.0 31.0 41.0 26 36.02819482681888 37.0 35.0 40.0 31.0 41.0 27 35.90287576999496 37.0 35.0 40.0 30.0 41.0 28 35.71394060341885 36.0 35.0 40.0 30.0 41.0 29 35.558916523086886 36.0 34.0 40.0 30.0 41.0 30 35.35180176631743 36.0 34.0 40.0 29.0 41.0 31 35.143233032842566 36.0 34.0 40.0 27.0 41.0 32 35.0091672238168 36.0 34.0 40.0 26.0 41.0 33 34.630119637472 36.0 33.0 40.0 24.0 41.0 34 34.42473793744702 36.0 33.0 40.0 23.0 41.0 35 34.33344442671439 36.0 33.0 40.0 23.0 41.0 36 34.25368375552185 36.0 34.0 40.0 23.0 41.0 37 34.13931412966416 36.0 34.0 40.0 22.0 41.0 38 34.017291516438114 35.0 33.0 40.0 22.0 41.0 39 33.91209820385568 35.0 33.0 40.0 21.0 41.0 40 33.83163158472352 35.0 33.0 40.0 21.0 41.0 41 33.74232933868467 35.0 33.0 40.0 21.0 41.0 42 33.624115208549206 35.0 33.0 40.0 21.0 41.0 43 33.45056007896383 35.0 33.0 40.0 20.0 41.0 44 33.207780643762575 35.0 33.0 40.0 19.0 41.0 45 32.99283885332778 35.0 33.0 39.0 20.0 41.0 46 32.97798903474664 35.0 33.0 39.0 20.0 41.0 47 32.96460463885562 35.0 33.0 39.0 20.0 41.0 48 32.875706368747885 35.0 33.0 39.0 20.0 41.0 49 32.829730204674405 35.0 33.0 39.0 20.0 41.0 50 32.77372230829154 35.0 33.0 39.0 20.0 41.0 51 32.35513221122285 35.0 32.0 38.0 18.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 2.0 10 4.0 11 7.0 12 10.0 13 26.0 14 89.0 15 167.0 16 388.0 17 927.0 18 1896.0 19 3404.0 20 5773.0 21 9413.0 22 14246.0 23 21298.0 24 32660.0 25 47838.0 26 62425.0 27 72659.0 28 78358.0 29 81866.0 30 90081.0 31 102837.0 32 122267.0 33 162283.0 34 301061.0 35 296795.0 36 295851.0 37 312601.0 38 380762.0 39 472239.0 40 241.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 28.991904995633693 16.882053167272293 23.139169034975563 30.986872802118448 2 32.888050863262904 19.517726800503894 26.867496567887816 20.72672576834539 3 25.750940758949582 21.11982801398026 34.088869318499334 19.040361908570823 4 23.276992156807296 23.443867881018317 31.680263823214744 21.598876138959643 5 20.985842663494108 32.16900737054086 30.1991197364461 16.646030229518928 6 79.92549337243821 2.0546552503068534 16.52779994034622 1.4920514369087223 7 75.99006084550815 7.267459671419443 15.187407800909888 1.5550716821625101 8 75.04745033957543 3.5316922484425044 18.314955794933738 3.105901617048323 9 45.552460651061075 16.831589840543966 23.783544309763357 13.832405198631598 10 31.958636904413236 17.946058440504782 30.448978849840124 19.646325805241858 11 28.76399524116353 14.706036814326604 38.001544534643294 18.528423409866573 12 23.913018595685404 16.413676739806508 38.64921894620185 21.02408571830624 13 18.776902272162623 19.488707862785535 41.8934486549958 19.840941210056037 14 20.612972879075862 17.644490407928163 42.17882398566694 19.563712727329037 15 26.416861416730125 15.33230050153612 39.33382349079642 18.917014590937338 16 24.71097205361838 16.199468502333296 37.348854088606736 21.740705355441587 17 24.761805691616892 18.807368790300806 37.064791679711725 19.366033838370576 18 25.37409854454205 24.035995602048697 32.45125188774586 18.138653965663394 19 26.62753486480609 22.2573569066755 31.643603007466147 19.47150522105226 20 26.52987368345927 23.508941670588598 33.90482461721597 16.056360028736155 21 22.506340738885445 19.370645896917463 36.58089584355898 21.542117520638122 22 24.73362837042169 19.595357508599637 35.739413979048464 19.93160014193021 23 27.016664680451676 18.933409280808384 34.98455128710098 19.065374751638963 24 27.088942707460156 16.917535719888477 33.24651217280474 22.747009399846625 25 20.51689393679258 19.168758925343226 35.48026341923882 24.834083718625376 26 19.00198419511499 19.166301405095616 36.922356499333105 24.909357900456293 27 20.223304428855464 22.453184239283022 35.25528249026923 22.068228841592287 28 24.07437331550453 23.20114567574064 32.851558370818935 19.8729226379359 29 23.61771219004105 20.045083713912327 37.01560761009859 19.321596485948035 30 28.322146566507566 19.35071641764917 33.47630714828677 18.85082986755649 31 29.449845378212363 19.79471963060441 32.01465490019438 18.740780090988846 32 29.208604418015444 19.69409595909609 30.456721721853146 20.64057790103532 33 24.03087857358792 21.711854741027864 34.18154813002908 20.075718555355138 34 22.237494756729063 24.622804306652743 33.306603592557956 19.833097344060242 35 24.614253482777496 28.592271805779145 28.441588783473616 18.351885927969743 36 25.06293608360147 26.295096338160175 28.28073903356838 20.361228544669977 37 24.684982935383378 28.797121267514882 27.54213637284824 18.975759424253503 38 24.164291624838324 24.713429573865987 28.068382352446108 23.053896448849578 39 23.40209003680894 21.448933739194487 32.22808885046629 22.920887373530284 40 20.943021214796023 23.11661371215503 31.651884514053986 24.288480558994962 41 20.394085253733916 25.976123675884722 28.311474868993976 25.318316201387386 42 19.622794207254465 20.789746013599174 30.14535727294701 29.442102506199348 43 21.065594245228205 20.129985988768123 32.623076317113025 26.181343448890647 44 23.904703424436637 22.28371633618069 31.023567282527974 22.788012956854697 45 24.594660650118467 23.51658354861884 31.102881223670025 20.785874577592665 46 21.306229241528456 24.467172579191065 30.6389485314465 23.587649647833985 47 20.47733796020433 24.224652361878945 33.01930937621403 22.278700301702692 48 23.702614464896847 22.983469978192034 32.6042577716553 20.70965778525582 49 21.82143321234254 21.83971312322545 33.319699145658234 23.01915451877377 50 20.13018797673368 22.06772387167839 35.374691042574355 22.427397109013576 51 19.191718224094874 20.099923446561053 35.11712272182823 25.591235607515838 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1033.0 1 14154.0 2 27275.0 3 104449.0 4 181623.0 5 109957.0 6 38291.0 7 33784.5 8 29278.0 9 28928.5 10 28579.0 11 28802.0 12 29025.0 13 27732.5 14 26440.0 15 24694.5 16 22949.0 17 21159.5 18 19370.0 19 17970.5 20 16571.0 21 16267.5 22 15964.0 23 15499.0 24 15034.0 25 15465.0 26 16567.0 27 17238.0 28 19525.0 29 21812.0 30 24881.5 31 27951.0 32 30740.0 33 33529.0 34 38750.0 35 43971.0 36 46223.5 37 48476.0 38 50875.0 39 53274.0 40 59636.5 41 65999.0 42 75332.0 43 84665.0 44 92963.0 45 101261.0 46 113748.5 47 126236.0 48 145839.5 49 165443.0 50 165849.0 51 166255.0 52 154801.0 53 143347.0 54 146948.5 55 150550.0 56 157907.0 57 165264.0 58 175063.0 59 184862.0 60 192808.5 61 200755.0 62 199544.0 63 198333.0 64 182128.0 65 165923.0 66 137842.0 67 109761.0 68 89120.5 69 68480.0 70 59291.5 71 50103.0 72 47016.0 73 43929.0 74 37217.0 75 24108.5 76 17712.0 77 13087.5 78 8463.0 79 6688.5 80 4914.0 81 3660.5 82 2407.0 83 1695.5 84 984.0 85 721.0 86 458.0 87 298.5 88 139.0 89 109.0 90 79.0 91 62.5 92 46.0 93 30.0 94 14.0 95 9.5 96 5.0 97 4.0 98 3.0 99 1.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2970474.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 26.915965858878543 #Duplication Level Percentage of deduplicated Percentage of total 1 76.9862781785474 20.721600350559083 2 8.690141425343217 4.678070998267284 3 2.9107301123131477 2.350353369822912 4 1.5546072843665986 1.6737502635990102 5 1.0130038575195244 1.3632988621953894 6 0.7716833478218947 1.246236158630353 7 0.5911412152668072 1.113779573752815 8 0.4870439294162519 1.048740622075351 9 0.4172080619936919 1.0106602157403988 >10 5.554017588379207 34.537134813375864 >50 0.865846047425649 15.545744102269824 >100 0.14923301188292118 6.238738134400618 >500 0.0053329057198973 0.9485502422268217 >1k 0.0029330981459435154 1.3549128549827152 >5k 3.999679289922975E-4 0.7234790388353556 >10k+ 3.999679289922975E-4 5.444950399266157 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 117006 3.938967316327293 No Hit GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 22620 0.7614946301499357 No Hit CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 12107 0.4075780498331243 No Hit GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 8788 0.2958450402191704 No Hit GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 6357 0.21400624950765434 No Hit CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5016 0.16886193920566211 No Hit TGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 4013 0.1350962842967149 No Hit AGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 3822 0.12866633405981673 No Hit CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA 3184 0.1071882803889211 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.04130653895640898 0.0 2 0.0 0.0 0.0 0.13260509938817847 0.0 3 0.0 0.0 0.0 0.21733905093934502 0.0 4 0.0 0.0 0.0 0.27409766926086543 0.0 5 0.0 0.0 0.0 0.6001735749917353 0.0 6 0.0 0.0 0.0 0.7498129928085552 0.0 7 0.0 0.0 0.0 1.1186766825765855 0.0 8 0.0 0.0 0.0 1.5490120431957997 0.0 9 0.0 0.0 0.0 1.960798175644695 0.0 10 0.0 0.0 0.0 2.203015411008479 0.0 11 0.0 0.0 0.0 2.4232832874484003 0.0 12 0.0 0.0 0.0 2.60833792855955 0.0 13 0.0 0.0 0.0 2.707312031682486 0.0 14 0.0 0.0 0.0 2.7791187534380035 0.0 15 0.0 0.0 0.0 2.9472400701032897 0.0 16 0.0 0.0 0.0 3.1370414284050288 0.0 17 0.0 0.0 0.0 3.39474440779485 0.0 18 0.0 0.0 0.0 3.540579718927013 0.0 19 0.0 0.0 0.0 3.716174590317909 0.0 20 0.0 0.0 0.0 3.909409744034117 0.0 21 6.732932185233738E-5 0.0 0.0 4.110152117136861 0.0 22 6.732932185233738E-5 0.0 0.0 4.309716227107189 0.0 23 6.732932185233738E-5 0.0 0.0 4.494333227626298 0.0 24 2.019879655570121E-4 0.0 0.0 4.651446200168727 0.0 25 2.019879655570121E-4 0.0 0.0 4.813878189137491 0.0 26 2.019879655570121E-4 0.0 0.0 4.981023230635919 0.0 27 2.019879655570121E-4 0.0 0.0 5.160455873372398 0.0 28 2.019879655570121E-4 0.0 0.0 5.3342328530732805 0.0 29 2.019879655570121E-4 0.0 0.0 5.524943157220026 0.0 30 2.019879655570121E-4 0.0 0.0 5.710738420871551 0.0 31 2.019879655570121E-4 0.0 0.0 5.905892460260551 0.0 32 2.019879655570121E-4 0.0 0.0 6.128651521609009 0.0 33 2.019879655570121E-4 0.0 0.0 6.3480104522039245 0.0 34 2.019879655570121E-4 0.0 0.0 6.605141132358001 0.0 35 2.019879655570121E-4 0.0 0.0 6.832747904879827 0.0 36 2.019879655570121E-4 0.0 0.0 7.082236707003664 0.0 37 2.019879655570121E-4 0.0 0.0 7.4337294317337905 0.0 38 2.019879655570121E-4 0.0 0.0 7.803973372599794 0.0 39 2.019879655570121E-4 0.0 0.0 8.235587990334203 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 33555 0.0 44.16853 1 CGGTCTA 505 0.0 41.881184 30 TATACGG 210 0.0 41.785713 1 GTTGATC 2295 0.0 41.7647 15 TACGGGA 455 0.0 41.53846 3 CACTTAC 6580 0.0 41.44377 36 ACTTACT 6595 0.0 41.17892 37 CGCACTT 6615 0.0 41.156467 34 GCACTTA 6615 0.0 41.156467 35 TCACGAC 525 0.0 41.14286 24 CTTACTG 6610 0.0 41.051437 38 CGTTTTA 1620 0.0 40.972225 1 CCGCACT 6690 0.0 40.79596 33 GGTACCT 2220 0.0 40.743244 7 TACGCGG 355 0.0 40.56338 1 CCCGCAC 6810 0.0 40.539646 32 CACGACG 535 0.0 40.373833 25 ACCCGCA 6800 0.0 40.33456 31 TTATCGG 45 1.9301297E-8 40.0 1 CATATGC 2350 0.0 39.92553 32 >>END_MODULE