SRR1043389_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1043389_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	728934
Sequences flagged as poor quality	0
Sequence length	51
%GC	39

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	39731	5.450562053628998	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4250	0.5830431836078438	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1671	0.22923886113146047	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	879	0.12058704903324582	No Hit
CTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	748	0.10261560031498052	No Hit
GTGTTGGGTTAACAGAGAAGTTATAGGTGGATTATTTATAGTGTGATTATT	737	0.10110654736917198	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTGCTAT	25	3.889396E-5	45.000004	31
CGGAACG	25	3.889396E-5	45.000004	34
AGCCGGC	25	3.889396E-5	45.000004	33
ACCGGTC	25	3.889396E-5	45.000004	40
TTAATCG	100	0.0	45.000004	19
TACCATA	30	2.1644046E-6	45.000004	36
GCGAAAC	25	3.889396E-5	45.000004	9
CGGCCCA	25	3.889396E-5	45.000004	36
GTCCTCA	25	3.889396E-5	45.000004	38
CGGCATA	25	3.889396E-5	45.000004	5
CGTGACA	30	2.1644046E-6	45.000004	28
CGGCACT	25	3.889396E-5	45.000004	39
GTTAGTG	25	3.889396E-5	45.000004	13
TAACGTA	25	3.889396E-5	45.000004	18
GAATACG	25	3.889396E-5	45.000004	25
ACGGGAT	215	0.0	45.000004	4
TACGCAG	25	3.889396E-5	45.000004	28
ACGGCAC	25	3.889396E-5	45.000004	38
CGGATTA	30	2.1644046E-6	45.000004	4
GTTCGCA	25	3.889396E-5	45.000004	10