##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1043389_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 728934 Sequences flagged as poor quality 0 Sequence length 51 %GC 39 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.625457174449263 31.0 31.0 34.0 30.0 34.0 2 30.724172558832485 31.0 31.0 34.0 26.0 34.0 3 31.599136547341736 31.0 31.0 34.0 28.0 34.0 4 35.19160308066299 37.0 35.0 37.0 33.0 37.0 5 35.50182595406443 37.0 35.0 37.0 33.0 37.0 6 35.86016841030875 37.0 35.0 37.0 35.0 37.0 7 33.97250231159474 37.0 35.0 37.0 32.0 37.0 8 34.918478216134794 37.0 35.0 37.0 32.0 37.0 9 36.922950500319644 39.0 37.0 39.0 32.0 39.0 10 36.820177135378515 39.0 35.0 39.0 32.0 39.0 11 36.35517481692444 38.0 35.0 39.0 32.0 39.0 12 36.155304869851044 38.0 35.0 39.0 32.0 39.0 13 36.211219397092194 39.0 35.0 39.0 32.0 39.0 14 37.55573481275397 40.0 35.0 41.0 33.0 41.0 15 37.75256196034209 40.0 35.0 41.0 33.0 41.0 16 37.73241610351555 40.0 35.0 41.0 33.0 41.0 17 37.70971583161164 40.0 36.0 41.0 33.0 41.0 18 37.435265744223756 39.0 36.0 41.0 33.0 41.0 19 37.15724194508694 38.0 35.0 41.0 33.0 41.0 20 36.86019310390241 38.0 35.0 40.0 33.0 41.0 21 36.77198209988833 38.0 35.0 40.0 33.0 41.0 22 36.69455122137258 37.0 35.0 40.0 33.0 41.0 23 36.60579147083275 37.0 35.0 40.0 33.0 41.0 24 36.431631670356985 37.0 35.0 40.0 32.0 41.0 25 36.33561063141519 36.0 35.0 40.0 32.0 41.0 26 36.09134023107716 36.0 35.0 40.0 31.0 41.0 27 35.938139804152364 36.0 35.0 40.0 31.0 41.0 28 35.89722389132624 36.0 35.0 40.0 31.0 41.0 29 35.85326929461378 36.0 35.0 40.0 31.0 41.0 30 35.6877755736459 36.0 35.0 40.0 31.0 41.0 31 35.28319024767674 35.0 35.0 40.0 30.0 41.0 32 35.109909813508494 35.0 34.0 40.0 29.0 41.0 33 34.917239420852916 35.0 34.0 40.0 27.0 41.0 34 34.75929233648039 35.0 34.0 40.0 25.0 41.0 35 34.55409817624092 35.0 34.0 40.0 24.0 41.0 36 34.3732889397394 35.0 34.0 40.0 23.0 41.0 37 34.2770003868663 35.0 34.0 40.0 23.0 41.0 38 34.18633237028318 35.0 34.0 40.0 23.0 41.0 39 33.985503488656036 35.0 34.0 40.0 22.0 41.0 40 33.950682777864664 35.0 34.0 40.0 22.0 41.0 41 33.88374256105491 35.0 33.0 40.0 21.0 41.0 42 33.77506879909566 35.0 33.0 40.0 21.0 41.0 43 33.61672661722461 35.0 33.0 40.0 21.0 41.0 44 33.42022323008668 35.0 33.0 40.0 19.0 41.0 45 33.274027552563055 35.0 33.0 40.0 19.0 41.0 46 33.25766804676418 35.0 33.0 40.0 20.0 41.0 47 33.255789961779804 35.0 33.0 40.0 20.0 41.0 48 33.160731972990696 35.0 33.0 39.0 19.0 41.0 49 33.043639067460155 35.0 33.0 39.0 18.0 41.0 50 32.93289653109884 35.0 33.0 39.0 18.0 41.0 51 32.424091893093205 35.0 32.0 39.0 17.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 1.0 10 2.0 11 0.0 12 1.0 13 11.0 14 16.0 15 31.0 16 90.0 17 169.0 18 319.0 19 702.0 20 1096.0 21 1911.0 22 3103.0 23 4971.0 24 7818.0 25 12005.0 26 15182.0 27 16457.0 28 16559.0 29 17126.0 30 18753.0 31 22412.0 32 28076.0 33 37900.0 34 71573.0 35 102704.0 36 76461.0 37 64206.0 38 80884.0 39 128309.0 40 85.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 26.148869444970323 17.76676626416109 24.964262882510624 31.120101408357957 2 31.11584862278341 20.692545552820967 29.010033830223314 19.181571994172312 3 21.781533033168984 21.838602671846836 38.31965582617905 18.06020846880513 4 23.399237791075738 24.13291189600156 34.62782638757418 17.84002392534852 5 19.496003753426237 31.94061465098349 31.607113949959803 16.95626764563047 6 79.23803801167185 2.0086866575026 17.301703583589187 1.4515717472363754 7 76.17452334504907 6.5464088655488695 15.643117209514168 1.635950579887891 8 75.2301305742358 3.867839886738717 18.355708472920732 2.54632106610475 9 42.91389892637743 23.63794252977636 23.475513558154784 9.972644985691433 10 34.80795243465115 21.552294172037524 33.36186815267226 10.27788524063907 11 31.956802673493073 21.984157687801638 33.56586467361928 12.493174965086002 12 18.125783678632086 34.129976102088804 33.54295450616928 14.20128571310983 13 13.031083746951028 37.0886801822936 34.52054644179034 15.359689628965038 14 11.452339992372423 25.011592270356438 47.917232561521345 15.618835175749792 15 13.159353247344752 21.614714089341422 46.55881053703079 18.667122126283036 16 14.608867195109571 22.13849264816842 35.015927367909846 28.236712788812156 17 17.335863054817032 22.97587984646072 41.70418721036472 17.98406988835752 18 20.717650706373966 25.07661873365764 35.476188516381455 18.729542043586935 19 22.776136111088245 24.603873601725258 34.279509530355284 18.34048075683121 20 16.188571256108233 29.6113228358123 36.71114257257859 17.48896333550088 21 18.04786167197579 25.824560248252926 34.33452136956158 21.793056710209704 22 13.448405479782807 29.636565175996733 33.541994199749226 23.373035144471242 23 13.48750366974239 24.0167148191743 47.02812600317724 15.467655507906066 24 14.265351869990972 26.121432118682897 42.36487802736599 17.248337983960138 25 14.029253677287656 32.98048931727701 35.14186469556915 17.84839230986619 26 14.087832368911316 33.19546076873901 34.85473307597121 17.861973786378467 27 13.021755056013301 29.853182867035972 41.71982648634856 15.405235590602167 28 12.513067026644386 25.531255230240323 39.78000751782741 22.175670225287885 29 14.50199880922004 31.64854431265382 37.47870177546939 16.370755102656755 30 21.082155586102445 29.44422951872186 33.658328463207916 15.81528643196778 31 21.353647929716544 28.1002120905322 34.7556843280736 15.790455651677654 32 19.751170887899317 31.560058935376865 32.91326786787281 15.775502308851008 33 15.533230717733018 29.55932910249762 34.735106333358026 20.172333846411338 34 15.092450070925489 29.750155706826682 36.16952975166476 18.98786447058307 35 22.805905610110106 28.179231590239993 32.021006017005654 16.993856782644244 36 17.238872106390975 32.78376368779615 32.64122677773296 17.33613742807991 37 17.54932545333322 31.654168964542745 32.74740923046531 18.049096351658726 38 17.382369322874226 32.93988207437162 32.35834794370958 17.31940065904458 39 20.240927162129903 29.128563079785003 31.13491756455317 19.495592193531923 40 14.556599088532021 28.434947471238825 33.41070659346388 23.597746846765276 41 17.684454285298806 28.361278250157078 31.583792222615493 22.370475241928624 42 17.29072865307422 28.30571766442504 34.054386268166944 20.349167414333806 43 16.67805315707595 30.94203316075255 33.29437233000518 19.085541352166313 44 14.191957022172103 37.12105622731276 30.04743913715096 18.639547613364176 45 17.86650094521589 31.830453785939465 32.022789443214336 18.280255825630302 46 17.563181303108376 31.720292920895442 30.553932180416883 20.1625935955793 47 17.48704272266076 28.120378525353463 34.61671427042777 19.775864481558 48 18.520195244013863 27.333201634167153 34.81083335391133 19.335769767907657 49 18.652305970087827 31.633042223301423 31.726191946047244 17.98845986056351 50 16.453753014676227 30.760398060729777 31.484331914823567 21.301517009770432 51 16.003506490299532 27.964397325409436 35.00440369086913 21.027692493421902 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 341.0 1 3673.5 2 7006.0 3 27672.5 4 48339.0 5 28238.5 6 8138.0 7 8312.5 8 8487.0 9 9923.0 10 11359.0 11 12708.0 12 14057.0 13 13868.5 14 13680.0 15 12410.5 16 11141.0 17 9868.0 18 8595.0 19 7970.0 20 7345.0 21 6970.0 22 6595.0 23 5998.0 24 5401.0 25 5408.0 26 6112.0 27 6809.0 28 6967.0 29 7125.0 30 8141.0 31 9157.0 32 10849.5 33 12542.0 34 15487.0 35 18432.0 36 20872.5 37 23313.0 38 24786.0 39 26259.0 40 30892.0 41 35525.0 42 45235.0 43 54945.0 44 61293.0 45 67641.0 46 66504.5 47 65368.0 48 59748.0 49 54128.0 50 47855.0 51 41582.0 52 37654.5 53 33727.0 54 29391.0 55 25055.0 56 24277.5 57 23500.0 58 21825.5 59 20151.0 60 17013.5 61 13876.0 62 11685.5 63 9495.0 64 7948.0 65 6401.0 66 5562.5 67 4724.0 68 4107.5 69 3491.0 70 2990.0 71 2489.0 72 2356.0 73 2223.0 74 1976.5 75 1654.5 76 1579.0 77 1221.5 78 864.0 79 672.0 80 480.0 81 375.5 82 271.0 83 171.0 84 71.0 85 43.0 86 15.0 87 17.0 88 19.0 89 15.5 90 12.0 91 12.0 92 12.0 93 9.0 94 6.0 95 9.0 96 12.0 97 8.5 98 5.0 99 3.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 728934.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 33.19179384234069 #Duplication Level Percentage of deduplicated Percentage of total 1 78.48439707656175 26.05037927605644 2 9.435211499250688 6.26343189884022 3 3.510311772723862 3.495406340477757 4 1.9071264118945335 2.5320378677954505 5 1.1897650192272347 1.9745217619509439 6 0.7826234862206577 1.5586006446486018 7 0.5669433928045611 1.3172507749972318 8 0.4092970575317388 1.0868242843096105 9 0.2973530267119478 0.8882712324917096 >10 2.4522460544683797 17.1683456310491 >50 0.6320613396643723 14.947301333702823 >100 0.3289213944821972 15.850237196826564 >500 0.002494978972052065 0.5664397413402782 >1k 8.316596573506882E-4 0.8172245878352309 >5k 0.0 0.0 >10k+ 4.158298286753441E-4 5.48372742767802 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 39731 5.450562053628998 No Hit CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4250 0.5830431836078438 No Hit CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1671 0.22923886113146047 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT 879 0.12058704903324582 No Hit CTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 748 0.10261560031498052 No Hit GTGTTGGGTTAACAGAGAAGTTATAGGTGGATTATTTATAGTGTGATTATT 737 0.10110654736917198 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.09726532168893205 0.0 2 0.0 0.0 0.0 0.30647493463057013 0.0 3 0.0 0.0 0.0 0.5058071101087341 0.0 4 0.0 0.0 0.0 0.6465605939632395 0.0 5 0.0 0.0 0.0 1.3984805208702022 0.0 6 0.0 0.0 0.0 1.6345787135735197 0.0 7 0.0 0.0 0.0 2.3318983611685007 0.0 8 0.0 0.0 0.0 3.0869735805985177 0.0 9 0.0 0.0 0.0 3.717208965420738 0.0 10 0.0 0.0 0.0 4.10174309333904 0.0 11 0.0 0.0 0.0 4.516732653436388 0.0 12 0.0 0.0 0.0 4.885764692002294 0.0 13 0.0 0.0 0.0 5.047782103729555 0.0 14 0.0 0.0 0.0 5.173033498231664 0.0 15 0.0 0.0 0.0 5.591727097377815 0.0 16 0.0 0.0 0.0 6.057064151212592 0.0 17 0.0 0.0 0.0 6.70280162538721 0.0 18 0.0 0.0 0.0 6.999810682448617 0.0 19 0.0 0.0 0.0 7.344423500618712 0.0 20 0.0 0.0 0.0 7.71139773971306 0.0 21 0.0 0.0 0.0 8.087289109850824 0.0 22 1.3718663143713971E-4 0.0 0.0 8.48115192870685 0.0 23 1.3718663143713971E-4 0.0 0.0 8.81067421741886 0.0 24 0.0017834262086828163 0.0 0.0 9.084773107030266 0.0 25 0.0017834262086828163 0.0 0.0 9.331571856985681 0.0 26 0.0017834262086828163 0.0 0.0 9.609923532171637 0.0 27 0.0017834262086828163 0.0 0.0 9.87839776989412 0.0 28 0.0017834262086828163 0.0 0.0 10.179522425898641 0.0 29 0.0017834262086828163 0.0 0.0 10.568446526022932 0.0 30 0.0017834262086828163 0.0 0.0 10.883838591696916 0.0 31 0.0017834262086828163 0.0 0.0 11.170695838031975 0.0 32 0.0017834262086828163 0.0 0.0 11.472917987087994 0.0 33 0.0017834262086828163 0.0 0.0 11.788858799287727 0.0 34 0.0017834262086828163 0.0 0.0 12.159262704168004 0.0 35 0.0017834262086828163 0.0 0.0 12.477124129207857 0.0 36 0.0017834262086828163 0.0 0.0 12.778248785212378 0.0 37 0.0017834262086828163 0.0 0.0 13.113807285707622 0.0 38 0.0017834262086828163 0.0 0.0 13.441683334842386 0.0 39 0.0017834262086828163 0.0 0.0 13.774772475971762 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTGCTAT 25 3.889396E-5 45.000004 31 CGGAACG 25 3.889396E-5 45.000004 34 AGCCGGC 25 3.889396E-5 45.000004 33 ACCGGTC 25 3.889396E-5 45.000004 40 TTAATCG 100 0.0 45.000004 19 TACCATA 30 2.1644046E-6 45.000004 36 GCGAAAC 25 3.889396E-5 45.000004 9 CGGCCCA 25 3.889396E-5 45.000004 36 GTCCTCA 25 3.889396E-5 45.000004 38 CGGCATA 25 3.889396E-5 45.000004 5 CGTGACA 30 2.1644046E-6 45.000004 28 CGGCACT 25 3.889396E-5 45.000004 39 GTTAGTG 25 3.889396E-5 45.000004 13 TAACGTA 25 3.889396E-5 45.000004 18 GAATACG 25 3.889396E-5 45.000004 25 ACGGGAT 215 0.0 45.000004 4 TACGCAG 25 3.889396E-5 45.000004 28 ACGGCAC 25 3.889396E-5 45.000004 38 CGGATTA 30 2.1644046E-6 45.000004 4 GTTCGCA 25 3.889396E-5 45.000004 10 >>END_MODULE