##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1043388_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 23966 Sequences flagged as poor quality 0 Sequence length 52 %GC 50 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.31002253192022 33.0 31.0 34.0 31.0 34.0 2 32.64954518901777 34.0 31.0 34.0 31.0 34.0 3 32.862346657765166 34.0 31.0 34.0 31.0 34.0 4 36.233330551614785 37.0 37.0 37.0 35.0 37.0 5 36.18843361428691 37.0 37.0 37.0 35.0 37.0 6 36.27309521822582 37.0 37.0 37.0 35.0 37.0 7 36.24146707836101 37.0 37.0 37.0 35.0 37.0 8 36.239547692564464 37.0 37.0 37.0 35.0 37.0 9 37.8291329383293 39.0 38.0 39.0 35.0 39.0 10 37.63089376616874 39.0 37.0 39.0 35.0 39.0 11 37.263289660352164 39.0 37.0 39.0 35.0 39.0 12 37.24313610948844 39.0 37.0 39.0 35.0 39.0 13 37.20829508470333 39.0 37.0 39.0 35.0 39.0 14 38.56471668196612 40.0 37.0 41.0 35.0 41.0 15 38.60948844195944 40.0 37.0 41.0 35.0 41.0 16 38.39956605190687 40.0 37.0 41.0 34.0 41.0 17 38.38754902778937 40.0 37.0 41.0 34.0 41.0 18 38.235750646749565 40.0 37.0 41.0 34.0 41.0 19 38.028373529166316 40.0 36.0 41.0 34.0 41.0 20 37.81736626888092 40.0 35.0 41.0 34.0 41.0 21 37.76020195276642 40.0 35.0 41.0 34.0 41.0 22 37.64061587248602 39.0 35.0 41.0 34.0 41.0 23 37.70495702244847 39.0 35.0 41.0 34.0 41.0 24 37.58862555286656 39.0 35.0 41.0 34.0 41.0 25 37.432445965117246 39.0 35.0 41.0 34.0 41.0 26 37.2904531419511 39.0 35.0 41.0 33.0 41.0 27 37.35600433948093 39.0 35.0 41.0 33.0 41.0 28 37.28523741967788 39.0 35.0 41.0 33.0 41.0 29 37.22160560794459 39.0 35.0 41.0 33.0 41.0 30 37.134607360427275 39.0 35.0 41.0 33.0 41.0 31 37.071517983810395 39.0 35.0 41.0 33.0 41.0 32 36.80697655011266 39.0 35.0 41.0 32.0 41.0 33 36.45890010848702 39.0 35.0 41.0 31.0 41.0 34 36.21038137361262 39.0 35.0 41.0 30.0 41.0 35 36.02883251272636 39.0 35.0 41.0 30.0 41.0 36 35.976883918885086 39.0 35.0 41.0 30.0 41.0 37 35.94083284653259 38.0 35.0 41.0 30.0 41.0 38 35.81223399816407 38.0 35.0 41.0 30.0 41.0 39 35.76954852708003 38.0 35.0 41.0 30.0 41.0 40 35.68993574230159 38.0 35.0 41.0 30.0 41.0 41 35.60606692814821 38.0 35.0 41.0 29.0 41.0 42 35.52507719268964 38.0 35.0 41.0 29.0 41.0 43 35.406617708420264 37.0 35.0 40.0 29.0 41.0 44 35.18576316448302 37.0 35.0 40.0 28.0 41.0 45 35.10398063923892 37.0 35.0 40.0 27.0 41.0 46 35.01835934240174 36.0 35.0 40.0 26.0 41.0 47 34.92159726278895 36.0 35.0 40.0 27.0 41.0 48 34.83180338813319 36.0 35.0 40.0 26.0 41.0 49 34.82458482850705 36.0 35.0 40.0 27.0 41.0 50 34.75678043895519 35.0 35.0 40.0 27.0 41.0 51 34.631311023950595 35.0 35.0 40.0 27.0 41.0 52 34.250855378452805 35.0 34.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 2.0 18 6.0 19 14.0 20 30.0 21 34.0 22 63.0 23 80.0 24 128.0 25 218.0 26 329.0 27 404.0 28 447.0 29 388.0 30 408.0 31 436.0 32 529.0 33 713.0 34 1884.0 35 2493.0 36 1931.0 37 2350.0 38 3589.0 39 7469.0 40 21.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 28.327630810314613 16.994909455061336 22.924142535258284 31.753317199365767 2 35.14145038804974 19.26896436618543 23.295501961111576 22.29408328465326 3 28.56964032379204 20.804473003421514 30.5849954101644 20.040891262622047 4 23.11608111491279 23.412334140031714 29.696236334807647 23.77534841024785 5 21.12576149545189 32.65459400817825 27.24693315530335 18.97271134106651 6 81.1649837269465 1.9193857965451053 14.512225653008429 2.403404823499958 7 80.21780856212969 1.886005173996495 14.094967871150796 3.8012183927230243 8 72.0562463489944 3.187849453392306 17.47892848201619 7.276975715597096 9 42.93999833096887 16.07276975715597 22.71134106651089 18.275890845364266 10 29.996661937745138 16.081114912793122 32.003671868480346 21.91855128098139 11 28.340148543770344 12.42593674372027 37.92038721522156 21.313527497287822 12 22.715513644329466 13.594258532921637 39.914879412501044 23.77534841024785 13 17.428857548193275 19.36076107819411 40.87874488859217 22.331636485020447 14 17.82525244095802 17.87532337478094 41.81757489777184 22.48184928648919 15 23.257948760744387 14.583159475924226 38.99691229241425 23.16197947091713 16 20.733539180505716 18.088124843528334 36.322289910706836 24.856046065259115 17 22.41508804139197 21.12576149545189 34.18175748977718 22.277392973378955 18 22.36084452975048 27.08420262037887 30.159392472669616 20.395560377201036 19 24.267712592839857 22.39422515229909 30.46399065342569 22.874071601435368 20 25.106400734373697 25.80739380789452 31.398648084786778 17.687557372945008 21 19.782191437870317 19.42752232329133 33.309688725694734 27.480597513143618 22 22.37336226320621 22.594508887590752 32.0996411583076 22.932487690895435 23 25.949261453726113 20.02837352916632 32.45848285070517 21.563882166402404 24 26.954852708003003 19.769673704414586 28.686472502712174 24.589001084870233 25 20.395560377201036 19.102061253442375 32.50020862889093 28.00216974046566 26 20.237002420095134 17.87115079696236 33.52249019444213 28.369356588500377 27 22.552783109404988 20.512392556121174 32.4876908954352 24.447133439038637 28 24.05073854627389 23.39147125093883 27.8185763164483 24.73921388633898 29 23.691896853876322 19.001919385796544 32.38754902778937 24.91863473253776 30 27.79771342735542 20.41225068847534 28.08144871901861 23.70858716515063 31 27.99382458482851 21.563882166402404 26.25803221230076 24.184261036468328 32 26.74205123925561 20.87540682633731 25.594592339147127 26.787949595259953 33 21.935241592255693 22.52774764249353 30.480680964699992 25.05632980055078 34 22.94917800216974 24.054911124092467 28.46949845614621 24.52641241759159 35 24.413752816490028 28.628056413252107 25.22323291329383 21.734957856964034 36 24.192606192105483 26.328966035216556 25.565384294417093 23.91304347826087 37 24.29692063756989 28.87423850454811 25.811566385713093 21.017274472168907 38 25.302511891846784 22.339981640657598 24.497204372861553 27.860302094634065 39 25.498623049319868 19.611115747308688 30.797796878911793 24.09246432445965 40 19.490110990569974 21.484603187849455 31.732454310272885 27.292831511307686 41 20.658432779771342 25.11474589001085 27.367937912042063 26.85888341817575 42 20.97972127180172 17.996328131519654 28.440290411416175 32.58366018526245 43 23.02428440290411 19.990820328799135 29.64616540098473 27.338729867312022 44 24.609863973963115 20.307936243010932 29.604439622798967 25.477760160226985 45 26.516732037052492 21.99783025953434 27.9771342735542 23.50830342985897 46 23.54168405240758 20.178586330635067 30.322123007594094 25.957606609363264 47 22.16890595009597 22.673787866143705 30.480680964699992 24.676625219060337 48 22.93666026871401 20.37052491028958 29.550196111157472 27.14261870983894 49 21.438704831845115 17.65834932821497 33.53083535007928 27.372110489860635 50 20.725194024868564 18.70149378285905 34.08996077776851 26.48335141450388 51 19.644496369857297 16.64024034048235 33.747809396645245 29.967453893015104 52 18.84753400650922 18.25085537845281 34.89944087457231 28.00216974046566 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 2.0 1 25.0 2 48.0 3 549.5 4 1051.0 5 622.0 6 193.0 7 163.5 8 134.0 9 138.0 10 142.0 11 136.5 12 131.0 13 134.0 14 120.5 15 104.0 16 106.0 17 108.0 18 89.0 19 70.0 20 79.0 21 88.0 22 81.0 23 74.0 24 77.5 25 81.0 26 78.0 27 75.0 28 79.0 29 83.0 30 101.0 31 119.0 32 136.5 33 154.0 34 174.0 35 194.0 36 212.0 37 230.0 38 259.5 39 302.0 40 315.0 41 410.0 42 505.0 43 614.5 44 724.0 45 898.5 46 1073.0 47 1313.5 48 1554.0 49 1814.0 50 2074.0 51 2214.0 52 2354.0 53 1880.0 54 1406.0 55 1408.0 56 1410.0 57 1353.0 58 1296.0 59 1377.0 60 1458.0 61 1479.0 62 1500.0 63 1467.0 64 1234.5 65 1035.0 66 848.5 67 662.0 68 570.0 69 478.0 70 418.0 71 358.0 72 374.5 73 391.0 74 304.0 75 217.0 76 161.0 77 105.0 78 81.5 79 58.0 80 45.0 81 32.0 82 22.5 83 13.0 84 9.0 85 5.0 86 3.0 87 1.0 88 0.5 89 0.0 90 0.0 91 0.0 92 0.0 93 0.5 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 23966.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 79.97579904865225 #Duplication Level Percentage of deduplicated Percentage of total 1 90.64538008034643 72.49436701994493 2 7.246830489904524 11.591421180005007 3 1.1895445296603537 2.8540432279062005 4 0.3443418375332603 1.1015605441041476 5 0.14086711535451557 0.5632980055078027 6 0.08347680909897219 0.4005674705833264 7 0.036521103980800336 0.2044563131102395 8 0.05217300568685762 0.3338062254861053 9 0.036521103980800336 0.2628724025703079 >10 0.1773882193353159 2.5118918467829423 >50 0.02608650284342881 1.4437119252274053 >100 0.015651901706057285 3.2170574981223403 >500 0.005217300568685762 3.020946340649253 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 724 3.020946340649253 No Hit CGGCTGTCTCTTATACACATCTGACGCCCAAATGCTCGTATGCCGTCTTCTG 296 1.2350830342985897 No Hit GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC 282 1.1766669448385214 No Hit CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA 193 0.805307518985229 No Hit CGGTCTGTCTCTTATACACATCTGACGCCCAAATGCTCGTATGCCGTCTTCT 92 0.3838771593090211 No Hit GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC 76 0.3171159142118 No Hit CCTGTCTCTTATACACATCTGACGCCCAAATGCTCGTATGCCGTCTTCTGCT 73 0.3045981807560711 Illumina Single End Adapter 1 (95% over 22bp) CTGTCTCTTATACACATCTGACGCCCAAATGCTCGTATGCCGTCTTCTGCTT 54 0.22531920220312107 Illumina Single End Adapter 1 (95% over 23bp) GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC 51 0.21280146874739211 No Hit TGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC 49 0.2044563131102395 No Hit AGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC 47 0.19611115747308686 No Hit CGCTGTCTCTTATACACATCTGACGCCCAAATGCTCGTATGCCGTCTTCTGC 41 0.17107569056162897 Illumina Single End Adapter 1 (95% over 21bp) GATCCTATTGTCATCATGGGCCGCCGCCCCGCCCGGTGTTACCGGTATTGTA 35 0.14604022365017108 No Hit GCTGTCTCTTATACACATCTGACGCCCAAATGCTCGTATGCCGTCTTCTGCT 25 0.1043144454644079 Illumina Single End Adapter 1 (95% over 22bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.23783693565885003 0.0 2 0.0 0.0 0.0 0.7468914295251606 0.0 3 0.0 0.0 0.0 1.2726362346657765 0.0 4 0.0 0.0 0.0 2.787281982808979 0.0 5 0.0 0.0 0.0 4.794291913544187 0.0 6 0.0 0.0 0.0 5.511975298339314 0.0 7 0.0 0.0 0.0 7.460569139614454 0.0 8 0.0 0.0 0.0 9.45923391471251 0.0 9 0.0 0.0 0.0 11.921054827672537 0.0 10 0.0 0.0 0.0 12.96002670449804 0.0 11 0.0 0.0 0.0 13.965617958774931 0.0 12 0.0 0.0 0.0 14.583159475924226 0.0 13 0.0 0.0 0.0 14.937828590503212 0.0 14 0.0 0.0 0.0 15.113076858883419 0.0 15 0.0 0.0 0.0 15.538679796378203 0.0 16 0.0 0.0 0.0 15.955937578235835 0.0 17 0.0 0.0 0.0 16.60268714011516 0.0 18 0.0 0.0 0.0 16.869732120504047 0.0 19 0.0 0.0 0.0 17.257781857631645 0.0 20 0.0 0.0 0.0 17.499791371109072 0.0 21 0.0 0.0 0.0 17.81690728532087 0.0 22 0.0 0.0 0.0 18.121505466076943 0.0 23 0.0 0.0 0.0 18.426103646833013 0.0 24 0.0 0.0 0.0 18.626387382124676 0.0 25 0.0 0.0 0.0 18.88508720687641 0.0 26 0.0 0.0 0.0 19.13544187599099 0.0 27 0.0 0.0 0.0 19.39414170074272 0.0 28 0.0 0.0 0.0 19.648668947675873 0.0 29 0.0 0.0 0.0 19.899023616790455 0.0 30 0.0 0.0 0.0 20.157723441542185 0.0 31 0.0 0.0 0.0 20.399732955019612 0.0 32 0.0 0.0 0.0 20.666777935408497 0.0 33 0.0 0.0 0.0 20.879579404155887 0.0 34 0.0 0.0 0.0 21.288492030376368 0.0 35 0.0 0.0 0.0 21.51381123257949 0.0 36 0.0 0.0 0.0 21.814236835516983 0.0 37 0.0 0.0 0.0 22.177251105733124 0.0 38 0.0 0.0 0.0 22.5861637319536 0.0 39 0.0 0.0 0.0 23.02845698072269 0.0 40 0.0 0.0 0.0 23.383126095301677 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TTATGAC 105 0.0 46.000004 26 TGGCAGG 35 9.6466465E-8 46.000004 1 AGCTTAT 105 0.0 46.000004 23 ACGCAAG 105 0.0 46.000004 18 TATGACC 105 0.0 46.000004 27 CTTATGA 105 0.0 46.000004 25 AAGCTTA 105 0.0 46.000004 22 CGCAAGC 105 0.0 46.000004 19 GCTTATG 105 0.0 46.000004 24 GCGGGAA 20 6.18788E-4 46.0 4 AGGGGGC 25 3.317319E-5 46.0 4 GCAAGCT 110 0.0 46.0 20 TTACTGG 110 0.0 46.0 39 TGACCCG 110 0.0 46.0 29 TACGGCG 25 3.317319E-5 46.0 14 ACCCGCA 110 0.0 46.0 31 CCGCACT 110 0.0 46.0 33 CACTTAC 110 0.0 46.0 36 GAATTCC 110 0.0 46.0 46 GTAGGGC 20 6.18788E-4 46.0 3 >>END_MODULE