##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1043385_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2841328 Sequences flagged as poor quality 0 Sequence length 51 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.336114661876415 33.0 31.0 34.0 31.0 34.0 2 32.651029377812065 34.0 31.0 34.0 31.0 34.0 3 32.70446425051948 34.0 31.0 34.0 31.0 34.0 4 36.22180226992449 37.0 37.0 37.0 35.0 37.0 5 36.20196154755804 37.0 37.0 37.0 35.0 37.0 6 36.37332155949612 37.0 37.0 37.0 35.0 37.0 7 36.326841885202974 37.0 37.0 37.0 35.0 37.0 8 36.23514075108541 37.0 37.0 37.0 35.0 37.0 9 37.82362261590355 39.0 38.0 39.0 35.0 39.0 10 37.67105557682886 39.0 37.0 39.0 35.0 39.0 11 37.57495861090307 39.0 37.0 39.0 35.0 39.0 12 37.61766927295969 39.0 37.0 39.0 35.0 39.0 13 37.63157368667046 39.0 37.0 39.0 35.0 39.0 14 39.09240890175298 41.0 39.0 41.0 35.0 41.0 15 39.143785581953225 41.0 39.0 41.0 35.0 41.0 16 39.117576006712355 41.0 39.0 41.0 35.0 41.0 17 39.085542746208816 41.0 39.0 41.0 35.0 41.0 18 38.77932959517521 40.0 38.0 41.0 35.0 41.0 19 38.47243612845824 40.0 37.0 41.0 35.0 41.0 20 38.13674908352714 40.0 35.0 41.0 35.0 41.0 21 38.06505443933259 40.0 35.0 41.0 35.0 41.0 22 38.01707089079473 40.0 35.0 41.0 35.0 41.0 23 37.986799482495506 40.0 35.0 41.0 35.0 41.0 24 37.89808040465585 40.0 35.0 41.0 34.0 41.0 25 37.873739321894554 40.0 35.0 41.0 34.0 41.0 26 37.82299861191668 40.0 35.0 41.0 34.0 41.0 27 37.81026442564885 40.0 35.0 41.0 34.0 41.0 28 37.713777853172886 40.0 35.0 41.0 34.0 41.0 29 37.69948348096383 40.0 35.0 41.0 34.0 41.0 30 37.58891792851793 40.0 35.0 41.0 34.0 41.0 31 37.415776003333654 40.0 35.0 41.0 33.0 41.0 32 37.1517501675273 40.0 35.0 41.0 33.0 41.0 33 36.80305054537878 40.0 35.0 41.0 32.0 41.0 34 36.467841797919846 40.0 35.0 41.0 31.0 41.0 35 36.25495050201877 40.0 35.0 41.0 30.0 41.0 36 36.16797603092638 40.0 35.0 41.0 30.0 41.0 37 36.050435570972446 40.0 35.0 41.0 29.0 41.0 38 35.94161990449536 39.0 35.0 41.0 29.0 41.0 39 35.845952667203505 39.0 35.0 41.0 28.0 41.0 40 35.73184757268432 39.0 35.0 41.0 27.0 41.0 41 35.61864276141297 39.0 35.0 41.0 26.0 41.0 42 35.5003695455083 39.0 35.0 41.0 26.0 41.0 43 35.37023286294296 38.0 35.0 41.0 25.0 41.0 44 35.256677511360884 38.0 35.0 41.0 24.0 41.0 45 35.19802747166114 38.0 35.0 41.0 24.0 41.0 46 35.11047123035426 38.0 35.0 40.0 23.0 41.0 47 34.97923682165523 38.0 35.0 40.0 23.0 41.0 48 34.92712597771183 38.0 35.0 40.0 23.0 41.0 49 34.87970800977571 38.0 35.0 40.0 24.0 41.0 50 34.82225212998992 37.0 35.0 40.0 24.0 41.0 51 34.4331291565071 37.0 34.0 40.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 1.0 10 1.0 11 4.0 12 0.0 13 7.0 14 12.0 15 28.0 16 84.0 17 185.0 18 430.0 19 872.0 20 1689.0 21 2944.0 22 4540.0 23 7249.0 24 13353.0 25 26145.0 26 43966.0 27 55522.0 28 55751.0 29 50032.0 30 47489.0 31 50664.0 32 58394.0 33 74113.0 34 141880.0 35 213528.0 36 283347.0 37 235207.0 38 401189.0 39 1071979.0 40 722.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 26.59038308847131 16.380192642313734 22.635683032722728 34.39374123649223 2 39.0490291863523 18.30295551939093 22.42613313211287 20.2218821621439 3 23.28523845187884 19.45132698512808 38.636616399092254 18.626818163900825 4 21.44715428841725 22.02762229492688 36.70734248210696 19.817880934548914 5 20.399545564609227 28.7804153550734 33.139538976140734 17.680500104176637 6 71.99425761474916 1.7231027181655902 22.795573055979457 3.4870666111057926 7 71.72990939448033 1.5603267204631075 21.096262029586164 5.6135018554704 8 62.67808574018909 3.5044528474009335 26.844735982610946 6.9727254297990235 9 32.055574013278296 20.698842231519908 30.51615301014174 16.729430745060057 10 21.441769482439195 17.175876913893784 44.09293823170011 17.289415371966914 11 20.064490970419467 14.069195812662247 44.57503674338197 21.291276473536318 12 18.24298356261579 14.784107994571553 47.39938507627419 19.573523366538463 13 15.156469087694205 18.59063789889798 45.59716442452262 20.655728588885196 14 14.405517420023314 19.919382767494636 45.41513686557835 20.259962946903702 15 16.36213770462263 16.592734101800286 46.4843552029192 20.560772990657888 16 15.941418942128468 20.947176813095847 42.25816238040803 20.853241864367646 17 16.30836003446276 20.70890794726973 42.17175912108704 20.810972897180473 18 17.05547546780942 25.417375255514322 39.6474465461221 17.879702730554165 19 17.425584093071972 21.052479685555486 38.85169188492142 22.670244336451123 20 17.638125552558524 25.194416132174812 38.430621174324116 18.736837140942544 21 16.337712506264676 20.17419319416836 39.25453168377604 24.233562615790927 22 15.61590214153382 23.02543036214052 37.61086365248926 23.747803843836405 23 15.72071228664906 20.45772258605835 42.114145216602935 21.707419910689648 24 19.871271461795327 19.557826481138395 38.87242162819639 21.698480428869882 25 16.571230072698402 20.76574756592692 40.33476599674518 22.3282563646295 26 16.96372259732069 18.882473266022085 40.16730908927093 23.986495047386292 27 19.748300794558038 19.57123570386805 41.325746270757904 19.354717230816014 28 18.717726358942016 19.996529791703036 38.07694852547823 23.20879532387672 29 18.627768423779305 18.30485603914789 40.90640010586599 22.16097543120682 30 19.96172212430244 18.03807937696739 39.114984260880824 22.885214237849343 31 19.18011577684801 17.868792339356805 38.846764611477454 24.104327272317732 32 17.899622993191915 17.003527927785882 42.09788521423785 22.998963864784354 33 15.944656864677361 16.99092818569345 41.040844281265656 26.023570668363526 34 16.344857052758428 16.341337571727024 42.880230652708875 24.433574722805673 35 19.56451349509807 17.719847902107748 38.587766002376355 24.12787260041783 36 17.690741793978027 17.99732378662372 38.471517543909044 25.840416875489208 37 19.725107414561077 19.892951464948787 38.154905030323846 22.227036090166287 38 19.122044339829827 17.97891690082947 35.66364038224379 27.23539837709691 39 21.97669540440245 17.352590056480633 37.89981304516761 22.770901493949307 40 17.91876897000276 16.934581294380653 39.93305243182061 25.21359730379597 41 19.602911033150697 20.809529909957597 35.72931389828982 23.858245158601893 42 18.986861073413557 17.50709527375931 38.207697245794925 25.298346407032206 43 21.24767010355721 18.990239775203708 37.28168659162194 22.48040352961714 44 19.059784720384272 19.084949009758816 38.94696423644155 22.90830203341536 45 20.38603075744863 18.631428684051965 36.942338230573874 24.040202327925535 46 21.559918460663464 17.49952838954179 37.00741343484455 23.93313971495019 47 19.000375880574154 18.527885552108028 38.055585275617595 24.41615329170022 48 19.037330431403905 16.983748444389384 35.6656464864317 28.31327463777501 49 19.00231159514143 15.485681343371832 40.358487298896854 25.153519762589887 50 18.913409504288136 15.637195001773819 40.719128520184924 24.730266973753118 51 17.477813191578022 15.047365175720648 40.07224790661269 27.402573726088647 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 546.0 1 3696.5 2 6847.0 3 121534.5 4 236222.0 5 134431.5 6 32641.0 7 30056.5 8 27472.0 9 26615.0 10 25758.0 11 24855.0 12 23952.0 13 23128.0 14 22304.0 15 20869.0 16 19434.0 17 18298.5 18 17163.0 19 15857.0 20 14551.0 21 13820.0 22 13089.0 23 12868.0 24 12647.0 25 13465.5 26 15904.5 27 17525.0 28 19364.0 29 21203.0 30 23604.5 31 26006.0 32 29831.5 33 33657.0 34 37539.0 35 41421.0 36 45567.5 37 49714.0 38 54326.0 39 58938.0 40 66204.0 41 73470.0 42 85305.0 43 97140.0 44 115054.0 45 132968.0 46 178926.0 47 224884.0 48 277208.5 49 329533.0 50 334304.5 51 339076.0 52 277842.0 53 216608.0 54 181294.5 55 145981.0 56 126594.5 57 107208.0 58 100069.5 59 92931.0 60 87706.5 61 82482.0 62 77647.0 63 72812.0 64 70340.5 65 67869.0 66 55388.0 67 42907.0 68 36721.5 69 30536.0 70 26609.5 71 22683.0 72 20598.5 73 18514.0 74 16064.5 75 10253.5 76 6892.0 77 5271.5 78 3651.0 79 2983.0 80 2315.0 81 1637.5 82 960.0 83 726.0 84 492.0 85 352.5 86 213.0 87 175.5 88 138.0 89 85.5 90 33.0 91 32.5 92 32.0 93 19.5 94 7.0 95 4.5 96 2.0 97 2.0 98 2.0 99 1.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2841328.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 29.906225258643044 #Duplication Level Percentage of deduplicated Percentage of total 1 74.53805268208271 22.29151793850968 2 10.489442076850995 6.273992351755887 3 3.8697388246680746 3.4718784294792004 4 1.9248519673373907 2.3026022609893695 5 1.2650561730160097 1.8916527437526847 6 0.8567931621691369 1.5374069584737173 7 0.6759912884458031 1.4151443421598373 8 0.5694215203365989 1.3623398603444254 9 0.4743121989209028 1.2766398717465746 >10 4.925432206216885 29.576820154391132 >50 0.24113755805576062 4.913258320607658 >100 0.15682424001086706 8.83213633214045 >500 0.007482609348708373 1.4871908722084908 >1k 0.004038233616763239 2.4881471591710422 >5k 5.938578848181233E-4 1.215106941827609 >10k+ 8.314010387453726E-4 9.664165462442297 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 194742 6.85390775017879 No Hit CCTGTCTCTTATACACATCTGACGCTTCTCTGCTCGTATGCCGTCTTCTGC 14434 0.5080018920730025 TruSeq Adapter, Index 23 (95% over 24bp) GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 13598 0.47857903065045637 No Hit CGTTCTGTCTCTTATACACATCTGACGCTTCTCTGCTCGTATGCCGTCTTC 13017 0.4581308458579932 No Hit CGTTTCTGTCTCTTATACACATCTGACGCTTCTCTGCTCGTATGCCGTCTT 12288 0.43247382913905047 No Hit CTGTCTCTTATACACATCTGACGCTTCTCTGCTCGTATGCCGTCTTCTGCT 12131 0.42694824391974456 Illumina Single End Adapter 1 (95% over 22bp) CGCTGTCTCTTATACACATCTGACGCTTCTCTGCTCGTATGCCGTCTTCTG 11866 0.4176216191865212 No Hit CGTTTTCTGTCTCTTATACACATCTGACGCTTCTCTGCTCGTATGCCGTCT 8601 0.3027105635111469 No Hit CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG 7752 0.27283016955451816 No Hit GCTGTCTCTTATACACATCTGACGCTTCTCTGCTCGTATGCCGTCTTCTGC 6333 0.22288873371888074 TruSeq Adapter, Index 23 (95% over 24bp) CGTCTGTCTCTTATACACATCTGACGCTTCTCTGCTCGTATGCCGTCTTCT 6196 0.21806704470585586 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTTCTCTGCTCGTATGCC 5327 0.1874827545429461 No Hit CGTTTTTCTGTCTCTTATACACATCTGACGCTTCTCTGCTCGTATGCCGTC 4943 0.17396794738235077 No Hit GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 3808 0.13402183767590364 No Hit GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC 3757 0.1322269023498871 No Hit GGGCCTGTCTCTTATACACATCTGACGCTTCTCTGCTCGTATGCCGTCTTC 3311 0.11653001694982065 TruSeq Adapter, Index 23 (95% over 21bp) CGTTTTTTCTGTCTCTTATACACATCTGACGCTTCTCTGCTCGTATGCCGT 3220 0.11332728921124206 No Hit TCTGTCTCTTATACACATCTGACGCTTCTCTGCTCGTATGCCGTCTTCTGC 3125 0.1099837822314073 TruSeq Adapter, Index 23 (95% over 24bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.438456946892439 0.0 2 0.0 0.0 0.0 1.357147080520095 0.0 3 0.0 0.0 0.0 2.3779725536791245 0.0 4 0.0 0.0 0.0 3.052938625881982 0.0 5 0.0 0.0 0.0 6.078178936046807 0.0 6 0.0 0.0 0.0 7.505856416436258 0.0 7 0.0 0.0 0.0 10.70650766120631 0.0 8 0.0 0.0 0.0 13.817376944865218 0.0 9 0.0 0.0 0.0 16.95851376539421 0.0 10 0.0 0.0 0.0 18.564276985972757 0.0 11 0.0 0.0 0.0 19.95697082491004 0.0 12 0.0 0.0 0.0 20.994865781071386 0.0 13 0.0 0.0 0.0 21.512229492687926 0.0 14 0.0 0.0 0.0 21.85471019185395 0.0 15 0.0 0.0 0.0 22.63033342155499 0.0 16 0.0 0.0 0.0 23.535262384349853 0.0 17 0.0 0.0 0.0 24.61982565898763 0.0 18 0.0 0.0 0.0 25.225246786009922 0.0 19 0.0 0.0 0.0 25.903098832658532 0.0 20 0.0 0.0 0.0 26.606643090836396 0.0 21 0.0 0.0 0.0 27.33411982002782 0.0 22 0.0 0.0 0.0 28.071732654589685 0.0 23 0.0 0.0 0.0 28.678596768834854 0.0 24 1.05584430942151E-4 0.0 0.0 29.18751372597602 0.0 25 1.05584430942151E-4 0.0 0.0 29.673906004516198 0.0 26 1.05584430942151E-4 0.0 0.0 30.183280494191447 0.0 27 1.05584430942151E-4 0.0 0.0 30.712012129539428 0.0 28 1.4077924125620132E-4 0.0 0.0 31.230326101034446 0.0 29 1.4077924125620132E-4 0.0 0.0 31.79115540338884 0.0 30 1.4077924125620132E-4 0.0 0.0 32.30939898526323 0.0 31 1.4077924125620132E-4 0.0 0.0 32.80314697915904 0.0 32 1.4077924125620132E-4 0.0 0.0 33.30625679259839 0.0 33 1.4077924125620132E-4 0.0 0.0 33.78304088792283 0.0 34 1.4077924125620132E-4 0.0 0.0 34.320113693315236 0.0 35 1.4077924125620132E-4 0.0 0.0 34.789577268094355 0.0 36 1.4077924125620132E-4 0.0 0.0 35.2829029242664 0.0 37 1.4077924125620132E-4 0.0 0.0 35.78358429579408 0.0 38 1.4077924125620132E-4 0.0 0.0 36.296583850931675 0.0 39 1.4077924125620132E-4 0.0 0.0 36.848544061086926 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 45270 0.0 44.388668 1 CGGTCTA 655 0.0 42.93893 30 CTTACGG 280 0.0 42.589287 1 CACGACG 675 0.0 41.666668 25 CGTTCTG 1475 0.0 41.64407 1 CGACGGT 675 0.0 41.333332 27 TCACGAC 690 0.0 41.086956 24 CGCACTT 3685 0.0 40.970146 34 TACGGGA 610 0.0 40.94262 3 CACTTAC 3760 0.0 40.63165 36 ACGGGAT 895 0.0 40.474857 4 CCGCACT 3725 0.0 40.4698 33 ATTGCGG 495 0.0 40.454544 1 ACCCGCA 3825 0.0 40.411766 31 CCCGCAC 3820 0.0 40.40576 32 GCACTTA 3800 0.0 40.263157 35 GTTTTTT 50730 0.0 39.89503 2 ACTTACT 3805 0.0 39.855453 37 CTAGCGG 625 0.0 39.6 1 CGTTTCT 1530 0.0 39.558823 1 >>END_MODULE